Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0007_C16
(558 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC30D10.18c |rpl102|rpl1-2, rpl10a-2|60S ribosomal protein L10... 188 5e-49
SPCC1183.08c |rpl101|rpl1-1, rpl10a-1|60S ribosomal protein L10a... 186 1e-48
SPBC776.05 |||membrane transporter |Schizosaccharomyces pombe|ch... 29 0.61
SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces pom... 27 2.5
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi... 26 4.3
SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces po... 25 5.7
SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3 ... 25 7.5
SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces po... 25 7.5
SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||... 25 10.0
>SPBC30D10.18c |rpl102|rpl1-2, rpl10a-2|60S ribosomal protein
L10a|Schizosaccharomyces pombe|chr 2|||Manual
Length = 216
Score = 188 bits (458), Expect = 5e-49
Identities = 95/171 (55%), Positives = 109/171 (63%)
Frame = +3
Query: 45 MSKVSRDTLYECVNAVIQSSKEKKRKFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRP 224
MSKVS + V +++ S+EKKR F ETVELQIGLKNYDPQ+DKRFSGT+KL +PRP
Sbjct: 1 MSKVSPANIRSSVETILKGSEEKKRNFTETVELQIGLKNYDPQRDKRFSGTIKLPNVPRP 60
Query: 225 KMQVCILGDQQHCDEAKQLDVPCMXXXXXXXXXXXXXXXXXXXXXXXXXXXSESLIKQIP 404
M +CILGD D AK V M SE LIKQIP
Sbjct: 61 NMSICILGDAHDLDRAKHGGVDAMSVDDLKKLNKNKKLVKKLAKKYDAFIASEVLIKQIP 120
Query: 405 RLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVLCLSVAVGHV 557
RLLGPGL+KAGKFP +SH + + KI EVK TIKFQ+KKVLCL VAVGHV
Sbjct: 121 RLLGPGLSKAGKFPSPVSHSDDLYGKIIEVKSTIKFQLKKVLCLGVAVGHV 171
>SPCC1183.08c |rpl101|rpl1-1, rpl10a-1|60S ribosomal protein
L10a|Schizosaccharomyces pombe|chr 3|||Manual
Length = 216
Score = 186 bits (454), Expect = 1e-48
Identities = 95/171 (55%), Positives = 110/171 (64%)
Frame = +3
Query: 45 MSKVSRDTLYECVNAVIQSSKEKKRKFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRP 224
MSKVS ++ V +++ S+EKKR F ETVELQIGLKNYDPQ+DKRFSGT+KL +PRP
Sbjct: 1 MSKVSVASVRSNVEQILKGSEEKKRNFTETVELQIGLKNYDPQRDKRFSGTIKLPNVPRP 60
Query: 225 KMQVCILGDQQHCDEAKQLDVPCMXXXXXXXXXXXXXXXXXXXXXXXXXXXSESLIKQIP 404
M +CILGD D AK V M SE LIKQIP
Sbjct: 61 NMAICILGDAHDLDRAKHGGVDAMSVDDLKKLNKNKKLVKKLAKKYDAFIASEVLIKQIP 120
Query: 405 RLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVLCLSVAVGHV 557
RLLGPGL+KAGKFP +SH + + KI EVK TIKFQ+KKVLCL VAVGHV
Sbjct: 121 RLLGPGLSKAGKFPSPVSHADDLYGKITEVKSTIKFQLKKVLCLGVAVGHV 171
>SPBC776.05 |||membrane transporter |Schizosaccharomyces pombe|chr
2|||Manual
Length = 404
Score = 28.7 bits (61), Expect = 0.61
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = -2
Query: 74 IERITRYFRHFYEPTTLHVQVH 9
I++IT F HF+ P LH VH
Sbjct: 216 IDKITSLFIHFFPPLVLHTIVH 237
>SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 534
Score = 26.6 bits (56), Expect = 2.5
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = +3
Query: 60 RDTLYECVNAVIQSSKEKKRKFLETVELQIGLKNYDPQKDKRF 188
++ L++ V SKE ++ T+E Q+ N+D QK F
Sbjct: 440 QNVLHDFVEGETSISKESLQQHKNTIENQLAAANWDCQKIDEF 482
>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 3071
Score = 25.8 bits (54), Expect = 4.3
Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = +3
Query: 78 CVNAVIQSSKEKKRKFLETVELQIGLKNYD-PQKDKRFSG 194
C N +++SS K F +TV + +YD P+ D + G
Sbjct: 939 CDNVLVRSSPSPKNNFDDTVFISYTSIDYDSPELDSVYEG 978
>SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1564
Score = 25.4 bits (53), Expect = 5.7
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = -2
Query: 527 HLLHLEFDGSLDFINFLC 474
HL DG LDFIN +C
Sbjct: 609 HLASEGLDGELDFINVIC 626
>SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 932
Score = 25.0 bits (52), Expect = 7.5
Identities = 14/49 (28%), Positives = 24/49 (48%)
Frame = +3
Query: 84 NAVIQSSKEKKRKFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRPKM 230
+A IQ + E+K FL ++ + N D KD+ KY+ P++
Sbjct: 170 DAPIQINHEQKEDFLVSIPRPTPMTNLDDGKDEIGQPDPHRKYMAPPRV 218
>SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 981
Score = 25.0 bits (52), Expect = 7.5
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = -3
Query: 148 ICSSTVSKNLRFFSFEDWMTAL 83
IC S + L F + EDW+ AL
Sbjct: 900 ICESMKNVKLDFVTLEDWLKAL 921
>SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1367
Score = 24.6 bits (51), Expect = 10.0
Identities = 10/28 (35%), Positives = 19/28 (67%)
Frame = +1
Query: 64 IRSMSALTQSSSLQKRRNVNF*KLLNCK 147
IR + + + ++KRRN+N+ + L+CK
Sbjct: 620 IRYGKSHNEDTCIKKRRNLNYNENLSCK 647
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,976,467
Number of Sequences: 5004
Number of extensions: 32565
Number of successful extensions: 98
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 233995432
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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