Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_C16
         (558 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT020041-1|AAV38844.1|  217|Homo sapiens ribosomal protein L10a ...   234   1e-61
BT020040-1|AAV38843.1|  217|Homo sapiens ribosomal protein L10a ...   234   1e-61
BC070216-1|AAH70216.1|  217|Homo sapiens ribosomal protein L10a ...   234   1e-61
BC011366-1|AAH11366.1|  217|Homo sapiens ribosomal protein L10a ...   234   1e-61
BC006791-1|AAH06791.1|  217|Homo sapiens ribosomal protein L10a ...   234   1e-61
AL022721-5|CAB38627.1|  217|Homo sapiens ribosomal protein L10a ...   234   1e-61
AB082926-1|BAC16802.1|  217|Homo sapiens ribosomal protein L10a ...   234   1e-61
U12404-1|AAA86463.1|  217|Homo sapiens Csa-19 protein.                234   2e-61
BC116456-1|AAI16457.1|  206|Homo sapiens RPL10A protein protein.      214   2e-55
X97999-1|CAA66636.1|  349|Homo sapiens transcription factor IID ...    29   8.4  
U18062-1|AAB60347.1|  349|Homo sapiens TFIID subunit TAFII55 pro...    29   8.4  
BC032737-1|AAH32737.1|  349|Homo sapiens TAF7 RNA polymerase II,...    29   8.4  
AF349038-1|AAK30585.1|  349|Homo sapiens TFIID subunit TAFII55 p...    29   8.4  

>BT020041-1|AAV38844.1|  217|Homo sapiens ribosomal protein L10a
           protein.
          Length = 217

 Score =  234 bits (573), Expect = 1e-61
 Identities = 112/170 (65%), Positives = 125/170 (73%)
 Frame = +3

Query: 48  SKVSRDTLYECVNAVIQSSKEKKRKFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRPK 227
           SKVSRDTLYE V  V+  ++ K+RKFLETVELQI LKNYDPQKDKRFSGTV+LK  PRPK
Sbjct: 3   SKVSRDTLYEAVREVLHGNQRKRRKFLETVELQISLKNYDPQKDKRFSGTVRLKSTPRPK 62

Query: 228 MQVCILGDQQHCDEAKQLDVPCMXXXXXXXXXXXXXXXXXXXXXXXXXXXSESLIKQIPR 407
             VC+LGDQQHCDEAK +D+P M                           SESLIKQIPR
Sbjct: 63  FSVCVLGDQQHCDEAKAVDIPHMDIEALKKLNKNKKLVKKLAKKYDAFLASESLIKQIPR 122

Query: 408 LLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVLCLSVAVGHV 557
           +LGPGLNKAGKFP LL+H E+M  K+DEVK TIKFQMKKVLCL+VAVGHV
Sbjct: 123 ILGPGLNKAGKFPSLLTHNENMVAKVDEVKSTIKFQMKKVLCLAVAVGHV 172


>BT020040-1|AAV38843.1|  217|Homo sapiens ribosomal protein L10a
           protein.
          Length = 217

 Score =  234 bits (573), Expect = 1e-61
 Identities = 112/170 (65%), Positives = 125/170 (73%)
 Frame = +3

Query: 48  SKVSRDTLYECVNAVIQSSKEKKRKFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRPK 227
           SKVSRDTLYE V  V+  ++ K+RKFLETVELQI LKNYDPQKDKRFSGTV+LK  PRPK
Sbjct: 3   SKVSRDTLYEAVREVLHGNQRKRRKFLETVELQISLKNYDPQKDKRFSGTVRLKSTPRPK 62

Query: 228 MQVCILGDQQHCDEAKQLDVPCMXXXXXXXXXXXXXXXXXXXXXXXXXXXSESLIKQIPR 407
             VC+LGDQQHCDEAK +D+P M                           SESLIKQIPR
Sbjct: 63  FSVCVLGDQQHCDEAKAVDIPHMDIEALKKLNKNKKLVKKLAKKYDAFLASESLIKQIPR 122

Query: 408 LLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVLCLSVAVGHV 557
           +LGPGLNKAGKFP LL+H E+M  K+DEVK TIKFQMKKVLCL+VAVGHV
Sbjct: 123 ILGPGLNKAGKFPSLLTHNENMVAKVDEVKSTIKFQMKKVLCLAVAVGHV 172


>BC070216-1|AAH70216.1|  217|Homo sapiens ribosomal protein L10a
           protein.
          Length = 217

 Score =  234 bits (573), Expect = 1e-61
 Identities = 112/170 (65%), Positives = 125/170 (73%)
 Frame = +3

Query: 48  SKVSRDTLYECVNAVIQSSKEKKRKFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRPK 227
           SKVSRDTLYE V  V+  ++ K+RKFLETVELQI LKNYDPQKDKRFSGTV+LK  PRPK
Sbjct: 3   SKVSRDTLYEAVREVLHGNQRKRRKFLETVELQISLKNYDPQKDKRFSGTVRLKSTPRPK 62

Query: 228 MQVCILGDQQHCDEAKQLDVPCMXXXXXXXXXXXXXXXXXXXXXXXXXXXSESLIKQIPR 407
             VC+LGDQQHCDEAK +D+P M                           SESLIKQIPR
Sbjct: 63  FSVCVLGDQQHCDEAKAVDIPHMDIEALKKLNKNKKLVKKLAKKYDAFLASESLIKQIPR 122

Query: 408 LLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVLCLSVAVGHV 557
           +LGPGLNKAGKFP LL+H E+M  K+DEVK TIKFQMKKVLCL+VAVGHV
Sbjct: 123 ILGPGLNKAGKFPSLLTHNENMVAKVDEVKSTIKFQMKKVLCLAVAVGHV 172


>BC011366-1|AAH11366.1|  217|Homo sapiens ribosomal protein L10a
           protein.
          Length = 217

 Score =  234 bits (573), Expect = 1e-61
 Identities = 112/170 (65%), Positives = 125/170 (73%)
 Frame = +3

Query: 48  SKVSRDTLYECVNAVIQSSKEKKRKFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRPK 227
           SKVSRDTLYE V  V+  ++ K+RKFLETVELQI LKNYDPQKDKRFSGTV+LK  PRPK
Sbjct: 3   SKVSRDTLYEAVREVLHGNQRKRRKFLETVELQISLKNYDPQKDKRFSGTVRLKSTPRPK 62

Query: 228 MQVCILGDQQHCDEAKQLDVPCMXXXXXXXXXXXXXXXXXXXXXXXXXXXSESLIKQIPR 407
             VC+LGDQQHCDEAK +D+P M                           SESLIKQIPR
Sbjct: 63  FSVCVLGDQQHCDEAKAVDIPHMDIEALKKLNKNKKLVKKLAKKYDAFLASESLIKQIPR 122

Query: 408 LLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVLCLSVAVGHV 557
           +LGPGLNKAGKFP LL+H E+M  K+DEVK TIKFQMKKVLCL+VAVGHV
Sbjct: 123 ILGPGLNKAGKFPSLLTHNENMVAKVDEVKSTIKFQMKKVLCLAVAVGHV 172


>BC006791-1|AAH06791.1|  217|Homo sapiens ribosomal protein L10a
           protein.
          Length = 217

 Score =  234 bits (573), Expect = 1e-61
 Identities = 112/170 (65%), Positives = 125/170 (73%)
 Frame = +3

Query: 48  SKVSRDTLYECVNAVIQSSKEKKRKFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRPK 227
           SKVSRDTLYE V  V+  ++ K+RKFLETVELQI LKNYDPQKDKRFSGTV+LK  PRPK
Sbjct: 3   SKVSRDTLYEAVREVLHGNQRKRRKFLETVELQISLKNYDPQKDKRFSGTVRLKSTPRPK 62

Query: 228 MQVCILGDQQHCDEAKQLDVPCMXXXXXXXXXXXXXXXXXXXXXXXXXXXSESLIKQIPR 407
             VC+LGDQQHCDEAK +D+P M                           SESLIKQIPR
Sbjct: 63  FSVCVLGDQQHCDEAKAVDIPHMDIEALKKLNKNKKLVKKLAKKYDAFLASESLIKQIPR 122

Query: 408 LLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVLCLSVAVGHV 557
           +LGPGLNKAGKFP LL+H E+M  K+DEVK TIKFQMKKVLCL+VAVGHV
Sbjct: 123 ILGPGLNKAGKFPSLLTHNENMVAKVDEVKSTIKFQMKKVLCLAVAVGHV 172


>AL022721-5|CAB38627.1|  217|Homo sapiens ribosomal protein L10a
           protein.
          Length = 217

 Score =  234 bits (573), Expect = 1e-61
 Identities = 112/170 (65%), Positives = 125/170 (73%)
 Frame = +3

Query: 48  SKVSRDTLYECVNAVIQSSKEKKRKFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRPK 227
           SKVSRDTLYE V  V+  ++ K+RKFLETVELQI LKNYDPQKDKRFSGTV+LK  PRPK
Sbjct: 3   SKVSRDTLYEAVREVLHGNQRKRRKFLETVELQISLKNYDPQKDKRFSGTVRLKSTPRPK 62

Query: 228 MQVCILGDQQHCDEAKQLDVPCMXXXXXXXXXXXXXXXXXXXXXXXXXXXSESLIKQIPR 407
             VC+LGDQQHCDEAK +D+P M                           SESLIKQIPR
Sbjct: 63  FSVCVLGDQQHCDEAKAVDIPHMDIEALKKLNKNKKLVKKLAKKYDAFLASESLIKQIPR 122

Query: 408 LLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVLCLSVAVGHV 557
           +LGPGLNKAGKFP LL+H E+M  K+DEVK TIKFQMKKVLCL+VAVGHV
Sbjct: 123 ILGPGLNKAGKFPSLLTHNENMVAKVDEVKSTIKFQMKKVLCLAVAVGHV 172


>AB082926-1|BAC16802.1|  217|Homo sapiens ribosomal protein L10a
           protein.
          Length = 217

 Score =  234 bits (573), Expect = 1e-61
 Identities = 112/170 (65%), Positives = 125/170 (73%)
 Frame = +3

Query: 48  SKVSRDTLYECVNAVIQSSKEKKRKFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRPK 227
           SKVSRDTLYE V  V+  ++ K+RKFLETVELQI LKNYDPQKDKRFSGTV+LK  PRPK
Sbjct: 3   SKVSRDTLYEAVREVLHGNQRKRRKFLETVELQISLKNYDPQKDKRFSGTVRLKSTPRPK 62

Query: 228 MQVCILGDQQHCDEAKQLDVPCMXXXXXXXXXXXXXXXXXXXXXXXXXXXSESLIKQIPR 407
             VC+LGDQQHCDEAK +D+P M                           SESLIKQIPR
Sbjct: 63  FSVCVLGDQQHCDEAKAVDIPHMDIEALKKLNKNKKLVKKLAKKYDAFLASESLIKQIPR 122

Query: 408 LLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVLCLSVAVGHV 557
           +LGPGLNKAGKFP LL+H E+M  K+DEVK TIKFQMKKVLCL+VAVGHV
Sbjct: 123 ILGPGLNKAGKFPSLLTHNENMVAKVDEVKSTIKFQMKKVLCLAVAVGHV 172


>U12404-1|AAA86463.1|  217|Homo sapiens Csa-19 protein.
          Length = 217

 Score =  234 bits (572), Expect = 2e-61
 Identities = 112/170 (65%), Positives = 125/170 (73%)
 Frame = +3

Query: 48  SKVSRDTLYECVNAVIQSSKEKKRKFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRPK 227
           SKVSRDTLYE V  V+  ++ K+RKFLETVELQI LKNYDPQKDKRFSGTV+LK  PRPK
Sbjct: 3   SKVSRDTLYEAVREVLHGNQRKRRKFLETVELQISLKNYDPQKDKRFSGTVRLKSTPRPK 62

Query: 228 MQVCILGDQQHCDEAKQLDVPCMXXXXXXXXXXXXXXXXXXXXXXXXXXXSESLIKQIPR 407
             VC+LGDQQHCDEAK +D+P M                           SESLIKQIPR
Sbjct: 63  FSVCVLGDQQHCDEAKAVDIPHMDIEALKKLNKNKKLVKKLVKKYDAFLASESLIKQIPR 122

Query: 408 LLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVLCLSVAVGHV 557
           +LGPGLNKAGKFP LL+H E+M  K+DEVK TIKFQMKKVLCL+VAVGHV
Sbjct: 123 ILGPGLNKAGKFPSLLTHNENMVAKVDEVKSTIKFQMKKVLCLAVAVGHV 172


>BC116456-1|AAI16457.1|  206|Homo sapiens RPL10A protein protein.
          Length = 206

 Score =  214 bits (522), Expect = 2e-55
 Identities = 101/157 (64%), Positives = 115/157 (73%)
 Frame = +3

Query: 87  AVIQSSKEKKRKFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRPKMQVCILGDQQHCD 266
           +V+  ++ K+RKFLETVELQI LKNYDPQKDKRFSGTV+LK  PRPK  VC+LGDQQHCD
Sbjct: 5   SVLHGNQRKRRKFLETVELQISLKNYDPQKDKRFSGTVRLKSTPRPKFSVCVLGDQQHCD 64

Query: 267 EAKQLDVPCMXXXXXXXXXXXXXXXXXXXXXXXXXXXSESLIKQIPRLLGPGLNKAGKFP 446
           EAK +D+P M                           SESLIKQIPR+LGPGLNKAGKFP
Sbjct: 65  EAKAVDIPHMDIEALKKLNKNKKLVKKLAKKYDAFLASESLIKQIPRILGPGLNKAGKFP 124

Query: 447 GLLSHQESMTQKIDEVKGTIKFQMKKVLCLSVAVGHV 557
            LL+H E+M  K+DEVK TIKFQMKKVLCL+VAVGHV
Sbjct: 125 SLLTHNENMVAKVDEVKSTIKFQMKKVLCLAVAVGHV 161


>X97999-1|CAA66636.1|  349|Homo sapiens transcription factor IID
           protein.
          Length = 349

 Score = 29.5 bits (63), Expect = 8.4
 Identities = 15/46 (32%), Positives = 26/46 (56%)
 Frame = +3

Query: 96  QSSKEKKRKFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRPKMQ 233
           +  K+K++KF+    + + LKN    + +RF  T K KYI  P ++
Sbjct: 121 KKDKDKEKKFIWNHGITLPLKNV---RKRRFRKTAKKKYIESPDVE 163


>U18062-1|AAB60347.1|  349|Homo sapiens TFIID subunit TAFII55
           protein.
          Length = 349

 Score = 29.5 bits (63), Expect = 8.4
 Identities = 15/46 (32%), Positives = 26/46 (56%)
 Frame = +3

Query: 96  QSSKEKKRKFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRPKMQ 233
           +  K+K++KF+    + + LKN    + +RF  T K KYI  P ++
Sbjct: 121 KKDKDKEKKFIWNHGITLPLKNV---RKRRFRKTAKKKYIESPDVE 163


>BC032737-1|AAH32737.1|  349|Homo sapiens TAF7 RNA polymerase II,
           TATA box binding protein (TBP)-associated factor, 55kDa
           protein.
          Length = 349

 Score = 29.5 bits (63), Expect = 8.4
 Identities = 15/46 (32%), Positives = 26/46 (56%)
 Frame = +3

Query: 96  QSSKEKKRKFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRPKMQ 233
           +  K+K++KF+    + + LKN    + +RF  T K KYI  P ++
Sbjct: 121 KKDKDKEKKFIWNHGITLPLKNV---RKRRFRKTAKKKYIESPDVE 163


>AF349038-1|AAK30585.1|  349|Homo sapiens TFIID subunit TAFII55
           protein.
          Length = 349

 Score = 29.5 bits (63), Expect = 8.4
 Identities = 15/46 (32%), Positives = 26/46 (56%)
 Frame = +3

Query: 96  QSSKEKKRKFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRPKMQ 233
           +  K+K++KF+    + + LKN    + +RF  T K KYI  P ++
Sbjct: 121 KKDKDKEKKFIWNHGITLPLKNV---RKRRFRKTAKKKYIESPDVE 163


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 69,347,506
Number of Sequences: 237096
Number of extensions: 1174982
Number of successful extensions: 2035
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1968
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2026
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5590411794
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)