Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_C16
         (558 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024200-4|AAF36008.1|  216|Caenorhabditis elegans Ribosomal pro...   215   1e-56
AJ270980-1|CAB65902.1|  186|Caenorhabditis elegans 60s ribosomal...   170   5e-43
AC024200-5|AAK66025.1|  155|Caenorhabditis elegans Ribosomal pro...   125   2e-29
Z81577-1|CAB04651.3|  289|Caenorhabditis elegans Hypothetical pr...    29   2.3  
Z83246-1|CAB05842.2|  312|Caenorhabditis elegans Hypothetical pr...    27   6.9  
AF038613-11|AAB92054.2|  836|Caenorhabditis elegans Mammalian el...    27   6.9  
Z68161-7|CAD36488.1| 1130|Caenorhabditis elegans Hypothetical pr...    27   9.1  
Z68161-6|CAA92295.2|  782|Caenorhabditis elegans Hypothetical pr...    27   9.1  
AF149286-1|AAF99085.1|  782|Caenorhabditis elegans KRP95 protein.      27   9.1  

>AC024200-4|AAF36008.1|  216|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 1, isoform a protein.
          Length = 216

 Score =  215 bits (526), Expect = 1e-56
 Identities = 101/171 (59%), Positives = 122/171 (71%)
 Frame = +3

Query: 45  MSKVSRDTLYECVNAVIQSSKEKKRKFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRP 224
           MSKVSR++L E +  V++ S EK RKF ET+ELQIGLKNYDPQKDKRFSG+++LK+IPRP
Sbjct: 1   MSKVSRESLNEAIAEVLKGSSEKPRKFRETIELQIGLKNYDPQKDKRFSGSIRLKHIPRP 60

Query: 225 KMQVCILGDQQHCDEAKQLDVPCMXXXXXXXXXXXXXXXXXXXXXXXXXXXSESLIKQIP 404
            M+VC+ GDQ H DEA   D+P M                           SESLIKQIP
Sbjct: 61  NMKVCVFGDQHHLDEAAAGDIPSMSADDLKKLNKQKKLIKKLAKSYDAFIASESLIKQIP 120

Query: 405 RLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVLCLSVAVGHV 557
           R+LGPGLNKAGKFP +++H ES+  K DE++ T+KFQMKKVLCLSVAVGHV
Sbjct: 121 RILGPGLNKAGKFPSVVTHGESLQSKSDEIRATVKFQMKKVLCLSVAVGHV 171


>AJ270980-1|CAB65902.1|  186|Caenorhabditis elegans 60s ribosomal
           protein L10A protein.
          Length = 186

 Score =  170 bits (414), Expect = 5e-43
 Identities = 78/134 (58%), Positives = 93/134 (69%)
 Frame = +3

Query: 156 KNYDPQKDKRFSGTVKLKYIPRPKMQVCILGDQQHCDEAKQLDVPCMXXXXXXXXXXXXX 335
           KNYDPQKDKRFSG+++LK+IPRP M+VC+ GDQ H DEA   D+P M             
Sbjct: 8   KNYDPQKDKRFSGSIRLKHIPRPNMKVCVFGDQHHLDEAAAGDIPSMSADDLKKLNKQKK 67

Query: 336 XXXXXXXXXXXXXXSESLIKQIPRLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQ 515
                         SESLIKQIPR+LGPGLNKAGKFP +++H ES+  K DE++ T+KFQ
Sbjct: 68  LIKKLAKSYDAFIASESLIKQIPRILGPGLNKAGKFPSVVTHGESLQSKSDEIRATVKFQ 127

Query: 516 MKKVLCLSVAVGHV 557
           MKKVLCLSVAVGHV
Sbjct: 128 MKKVLCLSVAVGHV 141


>AC024200-5|AAK66025.1|  155|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 1, isoform b protein.
          Length = 155

 Score =  125 bits (301), Expect = 2e-29
 Identities = 59/110 (53%), Positives = 70/110 (63%)
 Frame = +3

Query: 228 MQVCILGDQQHCDEAKQLDVPCMXXXXXXXXXXXXXXXXXXXXXXXXXXXSESLIKQIPR 407
           M+VC+ GDQ H DEA   D+P M                           SESLIKQIPR
Sbjct: 1   MKVCVFGDQHHLDEAAAGDIPSMSADDLKKLNKQKKLIKKLAKSYDAFIASESLIKQIPR 60

Query: 408 LLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVLCLSVAVGHV 557
           +LGPGLNKAGKFP +++H ES+  K DE++ T+KFQMKKVLCLSVAVGHV
Sbjct: 61  ILGPGLNKAGKFPSVVTHGESLQSKSDEIRATVKFQMKKVLCLSVAVGHV 110


>Z81577-1|CAB04651.3|  289|Caenorhabditis elegans Hypothetical
           protein R11.1 protein.
          Length = 289

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -3

Query: 157 LRPICSSTVSKNLRFFSFEDWMTALTHS 74
           L PI + T  +  +FF+FE +  A THS
Sbjct: 65  LPPILAETPKRATKFFTFEQYKIAFTHS 92


>Z83246-1|CAB05842.2|  312|Caenorhabditis elegans Hypothetical
           protein ZK795.1 protein.
          Length = 312

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = +3

Query: 135 VELQIGLKNYDPQKDKRFSGTVKLKYIPRPKMQVCILGDQQH 260
           ++L++G   YDP          ++KY P+ KM + ILG + H
Sbjct: 135 LDLKMGQVTYDPIAKPEKIEKERIKYPPQAKMGMRILGYRIH 176


>AF038613-11|AAB92054.2|  836|Caenorhabditis elegans Mammalian
           elks/cast/erc/rab6 interactingprotein homolog protein 1
           protein.
          Length = 836

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = +3

Query: 390 IKQIPRLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIK 509
           I +IP   G GLN A ++  L    ++M +K+++   +IK
Sbjct: 142 ISRIPTGTGSGLNIAREYEQLKVEYDTMMEKLNQTMNSIK 181


>Z68161-7|CAD36488.1| 1130|Caenorhabditis elegans Hypothetical
           protein F20C5.2b protein.
          Length = 1130

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -3

Query: 229 ILGRGMYLSLTVPEKRLSFCG 167
           I G G ++  T+PE+ + FCG
Sbjct: 665 ISGSGSFVEATIPEETIRFCG 685


>Z68161-6|CAA92295.2|  782|Caenorhabditis elegans Hypothetical
           protein F20C5.2a protein.
          Length = 782

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -3

Query: 229 ILGRGMYLSLTVPEKRLSFCG 167
           I G G ++  T+PE+ + FCG
Sbjct: 679 ISGSGSFVEATIPEETIRFCG 699


>AF149286-1|AAF99085.1|  782|Caenorhabditis elegans KRP95 protein.
          Length = 782

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -3

Query: 229 ILGRGMYLSLTVPEKRLSFCG 167
           I G G ++  T+PE+ + FCG
Sbjct: 679 ISGSGSFVEATIPEETIRFCG 699


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,089,506
Number of Sequences: 27780
Number of extensions: 190475
Number of successful extensions: 440
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 432
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 437
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1144922904
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)