Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0007_C15
(510 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC869.05c |||sulfate transporter |Schizosaccharomyces pombe|ch... 28 0.93
SPBC29A3.13 |||PWWP domain protein|Schizosaccharomyces pombe|chr... 27 1.6
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ... 27 2.2
SPCC18.15 |||WD repeat protein, human WRDR85 family|Schizosaccha... 26 2.9
SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual 26 2.9
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 26 3.8
SPBC337.10c |||anamorsin family protein|Schizosaccharomyces pomb... 26 3.8
SPCP1E11.06 |apl4||AP-1 adaptor complex gamma subunit Apl4 |Schi... 25 5.0
SPCC126.07c |||human CTD-binding SR-like protein rA9 homolog|Sch... 25 5.0
SPBC29A3.02c |his7||phosphoribosyl-AMP cyclohydrolase/phosphorib... 25 6.6
SPAC19B12.01 ||SPAC4F10.21|TPR repeat protein, TTC27 family|Schi... 25 6.6
SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 25 6.6
SPAC1783.03 |fta2|sma2|Sim4 and Mal2 associated |Schizosaccharom... 25 6.6
SPAC8E11.08c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 25 6.6
SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase Abc4|... 25 8.7
SPAC5H10.13c |gmh2||alpha-1,2-galactosyltransferase Gmh2 |Schizo... 25 8.7
SPAC1D4.05c |||Erd1 homolog|Schizosaccharomyces pombe|chr 1|||Ma... 25 8.7
SPBC26H8.10 |dis3|rrp44|3'-5' exoribonuclease subunit Dis3 |Schi... 25 8.7
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca... 25 8.7
SPAC458.07 |tfa1|SPAPYUG7.01|transcription factor TFIIE alpha su... 25 8.7
SPAC4G9.04c |||cleavage and polyadenylation specificity factor |... 25 8.7
>SPAC869.05c |||sulfate transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 840
Score = 27.9 bits (59), Expect = 0.93
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +1
Query: 73 AVRNINRTFMNKIIDFRSSVRFYSNQT 153
AV N++ T + +ID R + Y+N+T
Sbjct: 663 AVNNLDTTAVQSLIDIRKELEIYANET 689
>SPBC29A3.13 |||PWWP domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 359
Score = 27.1 bits (57), Expect = 1.6
Identities = 12/39 (30%), Positives = 17/39 (43%)
Frame = -3
Query: 361 F*HKTFSFFSEPTHLCDYDDKTTKQSYFHRFADMPYFAY 245
F HK F P HL +D Y + +D+P+ Y
Sbjct: 268 FRHKLQKAFLSPDHLIVEEDFYNASKYLNAISDIPFLNY 306
>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1894
Score = 26.6 bits (56), Expect = 2.2
Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = +2
Query: 389 VLFAETNIWY-WITEIQNCLSNLYLTILDSYWTPLRLVFAK 508
+ F +T +WY + + + + +L I S WTP R +FA+
Sbjct: 722 LFFLDTYLWYILVNTVFSVARSFFLGI--SIWTPWRNIFAR 760
>SPCC18.15 |||WD repeat protein, human WRDR85
family|Schizosaccharomyces pombe|chr 3|||Manual
Length = 310
Score = 26.2 bits (55), Expect = 2.9
Identities = 11/31 (35%), Positives = 18/31 (58%), Gaps = 4/31 (12%)
Frame = -1
Query: 300 KQPNKVIFIG----LLICRTLHIPNTCFYRD 220
+Q N +++ G L+C IPN+C +RD
Sbjct: 151 RQDNNLLYSGGDDAALVCYDQRIPNSCIWRD 181
>SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual
Length = 935
Score = 26.2 bits (55), Expect = 2.9
Identities = 12/33 (36%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Frame = -1
Query: 288 KVIFIGL-LICRTLHIPNTCFYRDNFSSVLRGV 193
K++FI L ++C I + F+R+ FS +L G+
Sbjct: 552 KILFISLCILCLLQFIVYSYFHREGFSVILMGL 584
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 25.8 bits (54), Expect = 3.8
Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = +1
Query: 124 SSVRFYSNQTDDGAQGS-EEQKIVDPSKDRTKIIPVETSIRYMQSTA 261
SS F+S + + S E ++DPS + I+P TS+ S++
Sbjct: 116 SSTSFFSPTSSEYTPSSTESSSLLDPSSVSSAILPSSTSVEVSISSS 162
>SPBC337.10c |||anamorsin family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 288
Score = 25.8 bits (54), Expect = 3.8
Identities = 15/50 (30%), Positives = 25/50 (50%)
Frame = +1
Query: 52 EQVHYKMAVRNINRTFMNKIIDFRSSVRFYSNQTDDGAQGSEEQKIVDPS 201
E V K++ +N NKI+DF S + DD + +E +++D S
Sbjct: 125 EAVPIKLSNKNGQSASKNKILDFLKSDKENLISGDDDQELIDEDELLDES 174
>SPCP1E11.06 |apl4||AP-1 adaptor complex gamma subunit Apl4
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 865
Score = 25.4 bits (53), Expect = 5.0
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = -1
Query: 243 PNTCFYRDNFSSVLRGVNNFLFFTTLSAIISLIA 142
PN ++ D V + NF+ +TLS + LIA
Sbjct: 441 PNKRWHFDTLLRVFKSAGNFVSESTLSTFLRLIA 474
>SPCC126.07c |||human CTD-binding SR-like protein rA9
homolog|Schizosaccharomyces pombe|chr 3|||Manual
Length = 571
Score = 25.4 bits (53), Expect = 5.0
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = +1
Query: 382 NPCPICRDEYLVLD 423
N CP+CR E+L +D
Sbjct: 73 NTCPLCRTEFLKVD 86
>SPBC29A3.02c |his7||phosphoribosyl-AMP
cyclohydrolase/phosphoribosyl-ATP pyrophosphohydrolase
His7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 417
Score = 25.0 bits (52), Expect = 6.6
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = -3
Query: 331 EPTHLCDYDDKTTKQSYFHRFADMPYFAYT 242
E LCD TTK++ AD+ YFA T
Sbjct: 340 EAEELCD---ATTKENVIWEMADLMYFAIT 366
>SPAC19B12.01 ||SPAC4F10.21|TPR repeat protein, TTC27
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 817
Score = 25.0 bits (52), Expect = 6.6
Identities = 15/34 (44%), Positives = 16/34 (47%)
Frame = +2
Query: 395 FAETNIWYWITEIQNCLSNLYLTILDSYWTPLRL 496
FAET I IQN + YL I W P RL
Sbjct: 53 FAETAIQMLEYFIQNNYTGPYLPIKPEIWLPQRL 86
>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 188
Score = 25.0 bits (52), Expect = 6.6
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = -3
Query: 322 HLCDYDDKTTKQSYFHRFADMP 257
HL D D+TT S HR +P
Sbjct: 140 HLLDIPDQTTLSSLLHRHTRLP 161
>SPAC1783.03 |fta2|sma2|Sim4 and Mal2 associated
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 351
Score = 25.0 bits (52), Expect = 6.6
Identities = 13/52 (25%), Positives = 25/52 (48%)
Frame = +1
Query: 97 FMNKIIDFRSSVRFYSNQTDDGAQGSEEQKIVDPSKDRTKIIPVETSIRYMQ 252
F+ +++ SSV Y+ + D + + +P K K+ +SIR+ Q
Sbjct: 111 FIKSLLEIDSSVVIYNTENPDNPKTKQVMPSAEPKK-HVKLNSSISSIRFTQ 161
>SPAC8E11.08c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 100
Score = 25.0 bits (52), Expect = 6.6
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = -1
Query: 291 NKVIFIGLLICRTLHIPNTCFYRDNFSSVLR 199
N+V+F L++C+ L N F + SS+LR
Sbjct: 6 NEVLFSRLVVCKNLTRKNFPFLQLKGSSILR 36
>SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase
Abc4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1469
Score = 24.6 bits (51), Expect = 8.7
Identities = 27/107 (25%), Positives = 49/107 (45%), Gaps = 3/107 (2%)
Frame = -1
Query: 459 RYKLLKQFCISVIQYQIFVSANRTWITSRNHAISDTRLSRFSRSQPTSVITTIKQPNKVI 280
RYK + Q C + Q FV+++ T I + +S + R + ++ T+I + V
Sbjct: 708 RYKKVIQACGLLTDLQSFVASDLTEIGEKGVTLSGGQKQRIALARAVYSPTSIVLMDDV- 766
Query: 279 FIGLLICRTLHIPNTCF---YRDNFSSVLRGVNNFLFFTTLSAIISL 148
F L I + I CF +N + +L N LF + + I+++
Sbjct: 767 FSALDIHTSNWIYKHCFQSSLMENRTVILVTHNVHLFMDSAAFIVTV 813
>SPAC5H10.13c |gmh2||alpha-1,2-galactosyltransferase Gmh2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 346
Score = 24.6 bits (51), Expect = 8.7
Identities = 8/28 (28%), Positives = 16/28 (57%)
Frame = +2
Query: 413 WYWITEIQNCLSNLYLTILDSYWTPLRL 496
W W+ + ++N +L++ DS+ P L
Sbjct: 170 WIWLLDQDAIITNTHLSLQDSFLKPENL 197
>SPAC1D4.05c |||Erd1 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 387
Score = 24.6 bits (51), Expect = 8.7
Identities = 11/25 (44%), Positives = 12/25 (48%)
Frame = +2
Query: 254 VRHISKPMKITLFGCFIVVITEVGW 328
+ H PM I GCFI I V W
Sbjct: 321 INHKRFPMFIYAIGCFINFILRVTW 345
>SPBC26H8.10 |dis3|rrp44|3'-5' exoribonuclease subunit Dis3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 970
Score = 24.6 bits (51), Expect = 8.7
Identities = 14/46 (30%), Positives = 22/46 (47%)
Frame = +1
Query: 322 GLAPRKTRKSCVRNGVISTGNPCPICRDEYLVLDHRNTKLLEQFIS 459
G + R+ +RN + CP+CR + L D R +LE +S
Sbjct: 28 GKVQKVVREQYLRNDIPCQSRACPLCRSK-LPKDSRG-NVLEPILS 71
>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 2410
Score = 24.6 bits (51), Expect = 8.7
Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
Frame = -1
Query: 468 SIVRYKLLKQFCISVIQYQIFVSA--NRTW 385
S++R KL+ FCISV ++S+ R+W
Sbjct: 2191 SLLRRKLVVWFCISVFLQNFWLSSLNGRSW 2220
>SPAC458.07 |tfa1|SPAPYUG7.01|transcription factor TFIIE alpha
subunit Tfa1 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 448
Score = 24.6 bits (51), Expect = 8.7
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = +1
Query: 337 KTRKSCVRNGVISTGNPCPICRDEYLVLD 423
KT + +RN S G CP C ++ LD
Sbjct: 121 KTVEDRMRNDFDSKGYVCPFCNKKFSSLD 149
>SPAC4G9.04c |||cleavage and polyadenylation specificity factor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 638
Score = 24.6 bits (51), Expect = 8.7
Identities = 7/24 (29%), Positives = 15/24 (62%)
Frame = +1
Query: 370 ISTGNPCPICRDEYLVLDHRNTKL 441
I+ PCPIC++++ + H ++
Sbjct: 513 IAASEPCPICQEKFQSVWHEEAEV 536
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,126,588
Number of Sequences: 5004
Number of extensions: 42681
Number of successful extensions: 142
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 204242806
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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