Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0007_C15
(510 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_1448 + 30235336-30236763 30 1.2
06_03_1443 + 30182018-30183445 30 1.2
06_03_1440 + 30166515-30167942 30 1.2
06_03_1437 + 30151030-30152457 30 1.2
06_03_1429 + 30100834-30102261 30 1.2
06_03_1425 + 30084383-30085810 30 1.2
06_03_1420 - 30053713-30055140 30 1.2
10_02_0060 - 4808506-4808535,4808564-4809588,4810125-4810292,481... 29 2.9
12_02_1104 + 26121288-26122200,26122324-26122506,26122841-26124009 28 3.8
06_02_0008 - 10552066-10552116,10552224-10552323,10552394-105524... 28 3.8
08_01_0835 + 8147177-8147359,8147871-8147968,8148045-8148102,814... 28 5.0
11_01_0382 - 2892887-2893161,2893593-2893717,2893801-2894013,289... 27 6.6
06_02_0097 + 11710560-11710859,11712605-11713270 27 6.6
07_01_1177 + 11125945-11126242,11126465-11128303,11128342-11128358 27 8.8
02_01_0425 - 3102629-3104692,3106505-3108546,3109918-3109989,311... 27 8.8
>06_03_1448 + 30235336-30236763
Length = 475
Score = 29.9 bits (64), Expect = 1.2
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +1
Query: 115 DFRSSVRFYSNQTDDGAQGSEEQKIVDPSKDRTKIIP 225
+F S++R Y + G+ SEE + +P +DR IP
Sbjct: 157 EFTSTLRLYRSSCSSGSWTSEEVSVEEPVRDRLCPIP 193
>06_03_1443 + 30182018-30183445
Length = 475
Score = 29.9 bits (64), Expect = 1.2
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +1
Query: 115 DFRSSVRFYSNQTDDGAQGSEEQKIVDPSKDRTKIIP 225
+F S++R Y + G+ SEE + +P +DR IP
Sbjct: 157 EFTSTLRLYRSSCSSGSWTSEEVSVEEPVRDRLCPIP 193
>06_03_1440 + 30166515-30167942
Length = 475
Score = 29.9 bits (64), Expect = 1.2
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +1
Query: 115 DFRSSVRFYSNQTDDGAQGSEEQKIVDPSKDRTKIIP 225
+F S++R Y + G+ SEE + +P +DR IP
Sbjct: 157 EFTSTLRLYRSSCSSGSWTSEEVSVEEPVRDRLCPIP 193
>06_03_1437 + 30151030-30152457
Length = 475
Score = 29.9 bits (64), Expect = 1.2
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +1
Query: 115 DFRSSVRFYSNQTDDGAQGSEEQKIVDPSKDRTKIIP 225
+F S++R Y + G+ SEE + +P +DR IP
Sbjct: 157 EFTSTLRLYRSSCSSGSWTSEEVSVEEPVRDRLCPIP 193
>06_03_1429 + 30100834-30102261
Length = 475
Score = 29.9 bits (64), Expect = 1.2
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +1
Query: 115 DFRSSVRFYSNQTDDGAQGSEEQKIVDPSKDRTKIIP 225
+F S++R Y + G+ SEE + +P +DR IP
Sbjct: 157 EFTSTLRLYRSSCSSGSWTSEEVSVEEPVRDRLCPIP 193
>06_03_1425 + 30084383-30085810
Length = 475
Score = 29.9 bits (64), Expect = 1.2
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +1
Query: 115 DFRSSVRFYSNQTDDGAQGSEEQKIVDPSKDRTKIIP 225
+F S++R Y + G+ SEE + +P +DR IP
Sbjct: 157 EFTSTLRLYRSSCSSGSWTSEEVSVEEPVRDRLCPIP 193
>06_03_1420 - 30053713-30055140
Length = 475
Score = 29.9 bits (64), Expect = 1.2
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +1
Query: 115 DFRSSVRFYSNQTDDGAQGSEEQKIVDPSKDRTKIIP 225
+F S++R Y + G+ SEE + +P +DR IP
Sbjct: 157 EFTSTLRLYRSSCSSGSWTSEEVSVEEPVRDRLCPIP 193
>10_02_0060 -
4808506-4808535,4808564-4809588,4810125-4810292,
4811202-4811652
Length = 557
Score = 28.7 bits (61), Expect = 2.9
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = -1
Query: 285 VIFIGLLICRTLHIPNTCFYRDNFSSVLRGVNNFLFFT 172
++FI L+ H+ FY N VL+GV N +T
Sbjct: 212 IVFIVLIFMVKQHLKLKKFYEQNGGPVLKGVRNIKIYT 249
>12_02_1104 + 26121288-26122200,26122324-26122506,26122841-26124009
Length = 754
Score = 28.3 bits (60), Expect = 3.8
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +2
Query: 296 CFIVVITEVGWLREKRESLVSEM 364
CF V+ EVGW K++ LV +
Sbjct: 210 CFYSVVAEVGWYNFKKQDLVGHL 232
>06_02_0008 -
10552066-10552116,10552224-10552323,10552394-10552449,
10553950-10557180
Length = 1145
Score = 28.3 bits (60), Expect = 3.8
Identities = 18/51 (35%), Positives = 29/51 (56%)
Frame = +2
Query: 158 MALKVVKNRKLLTPLRTELKLSL*KQVLGICKVRHISKPMKITLFGCFIVV 310
M+ KV+K R L T + T+L L V+G C+ + S + + +F F+VV
Sbjct: 688 MSNKVIKRRALQTAMITDLLALLGAFVVGSCREKTKSIYISVVIF--FVVV 736
>08_01_0835 +
8147177-8147359,8147871-8147968,8148045-8148102,
8148192-8148271,8148770-8148872,8148966-8149181
Length = 245
Score = 27.9 bits (59), Expect = 5.0
Identities = 16/64 (25%), Positives = 28/64 (43%)
Frame = +1
Query: 175 EEQKIVDPSKDRTKIIPVETSIRYMQSTAYQQTYENNFVWLFYRRNHRGGLAPRKTRKSC 354
+ K+++ + II +E + + + NNF+W F + GGL +K R
Sbjct: 167 QNNKVIEEGLGKHDIICIEDLVHEIMTVGPHFKEANNFLWPFKLKAPLGGL--KKKRNHY 224
Query: 355 VRNG 366
V G
Sbjct: 225 VEGG 228
>11_01_0382 -
2892887-2893161,2893593-2893717,2893801-2894013,
2894101-2895363,2895669-2895712
Length = 639
Score = 27.5 bits (58), Expect = 6.6
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +1
Query: 145 NQTDDGAQGSEEQKIVDPSKDRTKIIPVE 231
++ DDG++G++ K P K R I+P E
Sbjct: 325 HEADDGSKGAQSIKNGKPKKQRRLILPYE 353
>06_02_0097 + 11710560-11710859,11712605-11713270
Length = 321
Score = 27.5 bits (58), Expect = 6.6
Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 5/55 (9%)
Frame = -2
Query: 416 TKYSS--LQIGHGLPVEITPFLTQDFLVFLGANPPL*LRR*NNQTKL---FS*VC 267
T +SS ++ +G P E+ ++ FLVFLG + L L + NN T FS VC
Sbjct: 195 TSHSSDVMRFIYGQPFEVNIEVSVPFLVFLGEDDHLFLLQNNNLTPFGHAFSVVC 249
>07_01_1177 + 11125945-11126242,11126465-11128303,11128342-11128358
Length = 717
Score = 27.1 bits (57), Expect = 8.8
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = +1
Query: 64 YKMAVRNINRTFMNKIIDFRSSVRFY-SNQTDDGAQGSEEQK 186
YK+ N+TFM++ + F SV F S TD GS+E++
Sbjct: 613 YKLWNPETNKTFMSRSVVFNESVMFNDSLPTDIIPGGSDEEQ 654
>02_01_0425 - 3102629-3104692,3106505-3108546,3109918-3109989,
3110157-3111444
Length = 1821
Score = 27.1 bits (57), Expect = 8.8
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = -1
Query: 246 IPNTCFYRDNFSSVLRGVNNFLFF 175
IP FY DNFS + G+ LFF
Sbjct: 1779 IPTPAFYTDNFSVNIFGITVGLFF 1802
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,552,260
Number of Sequences: 37544
Number of extensions: 234184
Number of successful extensions: 776
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 766
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 776
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1095026320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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