Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_C15
         (510 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z66524-2|CAA91421.1|  238|Caenorhabditis elegans Hypothetical pr...    75   4e-14
U50191-9|AAK31558.1|  139|Caenorhabditis elegans Hypothetical pr...    39   0.002
Z70213-1|CAA94175.1| 1354|Caenorhabditis elegans Hypothetical pr...    28   3.4  
AY874872-1|AAX62733.1| 1668|Caenorhabditis elegans chitin syntha...    27   6.0  
AF026210-2|AAB71283.2| 1668|Caenorhabditis elegans Chitin syntha...    27   6.0  
AF067936-5|AAC19211.1|  430|Caenorhabditis elegans Hypothetical ...    27   7.9  
AF067936-4|AAC19210.1|  903|Caenorhabditis elegans Hypothetical ...    27   7.9  
AF038618-7|AAB92070.2|  227|Caenorhabditis elegans Syaptophysin ...    27   7.9  

>Z66524-2|CAA91421.1|  238|Caenorhabditis elegans Hypothetical
           protein T13H5.5 protein.
          Length = 238

 Score = 74.5 bits (175), Expect = 4e-14
 Identities = 36/98 (36%), Positives = 60/98 (61%), Gaps = 3/98 (3%)
 Frame = +1

Query: 226 VETSIRYMQSTAYQQTYENNFVWLFYRRNHRGG--LAPRKTRKSCV-RNGVISTGNPCPI 396
           +   I YM+S  Y + Y+   ++ +Y+RN +G   L P   R  C+ ++G  +  + CP+
Sbjct: 54  IAEQISYMKSRGYAEAYKGLPIYRWYKRNIKGQSKLQP-PPRLFCIDKHGRFNLNHACPV 112

Query: 397 CRDEYLVLDHRNTKLLEQFISHYTGQLLDAFETGLCQK 510
           CRDEYL  D+RN  L+EQF++  T Q +D  ++GLC++
Sbjct: 113 CRDEYLYFDYRNPGLIEQFLADGTDQPIDILKSGLCRE 150


>U50191-9|AAK31558.1|  139|Caenorhabditis elegans Hypothetical
           protein T14B4.2 protein.
          Length = 139

 Score = 38.7 bits (86), Expect = 0.002
 Identities = 14/31 (45%), Positives = 25/31 (80%)
 Frame = +1

Query: 418 LDHRNTKLLEQFISHYTGQLLDAFETGLCQK 510
           LD++N++LL+QF+S ++G++ D   TGLC +
Sbjct: 63  LDYKNSRLLQQFVSTFSGRVYDRHITGLCDE 93


>Z70213-1|CAA94175.1| 1354|Caenorhabditis elegans Hypothetical
           protein ZK930.1 protein.
          Length = 1354

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 17/54 (31%), Positives = 27/54 (50%)
 Frame = +1

Query: 235 SIRYMQSTAYQQTYENNFVWLFYRRNHRGGLAPRKTRKSCVRNGVISTGNPCPI 396
           S R+M+  A  +T+E  FV+  + R     L P   R   +R  ++ + N CPI
Sbjct: 35  STRFMK-VARGRTHEGVFVYKVFVRQDLASLDPFPQRIIDIRKALMKSPNCCPI 87


>AY874872-1|AAX62733.1| 1668|Caenorhabditis elegans chitin synthase
           2 protein.
          Length = 1668

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 13/47 (27%), Positives = 23/47 (48%)
 Frame = -1

Query: 387 WITSRNHAISDTRLSRFSRSQPTSVITTIKQPNKVIFIGLLICRTLH 247
           W+ +   A+S      F RS   ++   +K+P  + F+ +LI  T H
Sbjct: 180 WVWATLLALSAPEALCFVRSMHRTMFRNVKRPTFIQFVFVLIIETFH 226


>AF026210-2|AAB71283.2| 1668|Caenorhabditis elegans Chitin synthase
           protein 2 protein.
          Length = 1668

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 13/47 (27%), Positives = 23/47 (48%)
 Frame = -1

Query: 387 WITSRNHAISDTRLSRFSRSQPTSVITTIKQPNKVIFIGLLICRTLH 247
           W+ +   A+S      F RS   ++   +K+P  + F+ +LI  T H
Sbjct: 180 WVWATLLALSAPEALCFVRSMHRTMFRNVKRPTFIQFVFVLIIETFH 226


>AF067936-5|AAC19211.1|  430|Caenorhabditis elegans Hypothetical
           protein C24G6.2b protein.
          Length = 430

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +1

Query: 25  IGFIIIKKKEQVHYKMAVRNINRTFMNKIIDF 120
           I F   KK E + +K  +  + +  MN+ IDF
Sbjct: 20  IWFYFRKKSENMKFKFQMEQVGKNNMNRYIDF 51


>AF067936-4|AAC19210.1|  903|Caenorhabditis elegans Hypothetical
           protein C24G6.2a protein.
          Length = 903

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +1

Query: 25  IGFIIIKKKEQVHYKMAVRNINRTFMNKIIDF 120
           I F   KK E + +K  +  + +  MN+ IDF
Sbjct: 493 IWFYFRKKSENMKFKFQMEQVGKNNMNRYIDF 524


>AF038618-7|AAB92070.2|  227|Caenorhabditis elegans Syaptophysin
           protein 1 protein.
          Length = 227

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 22/61 (36%), Positives = 27/61 (44%)
 Frame = +2

Query: 287 LFGCFIVVITEVGWLREKRESLVSEMA*FLLVIHVLFAETNIWYWITEIQNCLSNLYLTI 466
           +F CF+ VI    +  EKR  LV   A  LL I   F  +  W     I N  S+  LT 
Sbjct: 107 IFICFVYVIFWNIYQTEKRIPLVDLGATALLFILFFFCSSIWWAGANTIGNATSDERLTE 166

Query: 467 L 469
           L
Sbjct: 167 L 167


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,749,824
Number of Sequences: 27780
Number of extensions: 241858
Number of successful extensions: 729
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 714
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 728
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 988489374
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)