Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0007_C15
(510 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY569717-1|AAS86670.1| 397|Apis mellifera complementary sex det... 25 0.34
AY569712-1|AAS86665.1| 408|Apis mellifera complementary sex det... 25 0.34
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso... 25 0.60
DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channe... 23 1.8
AY350618-1|AAQ57660.1| 425|Apis mellifera complementary sex det... 23 1.8
M29491-1|AAA27726.1| 79|Apis mellifera protein ( Bee homeobox-... 23 2.4
AY921579-1|AAX14899.1| 996|Apis mellifera ephrin receptor protein. 23 2.4
AY395073-1|AAQ96729.1| 203|Apis mellifera GABA neurotransmitter... 22 3.2
U70841-1|AAC47455.1| 377|Apis mellifera ultraviolet sensitive o... 21 7.4
AF004168-1|AAC13417.1| 377|Apis mellifera blue-sensitive opsin ... 21 7.4
DQ667188-1|ABG75740.1| 383|Apis mellifera histamine-gated chlor... 21 9.8
DQ325103-1|ABD14117.1| 182|Apis mellifera complementary sex det... 21 9.8
AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic ac... 21 9.8
>AY569717-1|AAS86670.1| 397|Apis mellifera complementary sex
determiner protein.
Length = 397
Score = 25.4 bits (53), Expect = 0.34
Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Frame = +1
Query: 205 DRTKIIPVETSI-RYMQSTAYQQ-TYENNFVWLFYRRNHRGGLAPRKTRKSCVRNGVIST 378
++ K++ TS RY +S +Q +Y+N + YR +G R R+ +IS+
Sbjct: 247 EKEKLLEERTSRKRYSRSREREQNSYKNEREYRKYRETSKGRSRDRTERERSKETKIISS 306
Query: 379 GN 384
N
Sbjct: 307 NN 308
>AY569712-1|AAS86665.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 25.4 bits (53), Expect = 0.34
Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Frame = +1
Query: 205 DRTKIIPVETSI-RYMQSTAYQQ-TYENNFVWLFYRRNHRGGLAPRKTRKSCVRNGVIST 378
++ K++ TS RY +S +Q +Y+N + YR +G R R+ +IS+
Sbjct: 258 EKEKLLEERTSRKRYSRSREREQNSYKNEREYRKYRETSKGRSRDRTERERSKETKIISS 317
Query: 379 GN 384
N
Sbjct: 318 NN 319
>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
protein.
Length = 1770
Score = 24.6 bits (51), Expect = 0.60
Identities = 12/50 (24%), Positives = 24/50 (48%)
Frame = +1
Query: 169 GSEEQKIVDPSKDRTKIIPVETSIRYMQSTAYQQTYENNFVWLFYRRNHR 318
GS++ K V + + ++ I ++ AYQ+ EN ++ Y+ R
Sbjct: 1513 GSDKIKFVPGTTSQPEVFVNGEKIVVSRNKAYQKVEENEIIFEIYKMGDR 1562
>DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channel
protein.
Length = 463
Score = 23.0 bits (47), Expect = 1.8
Identities = 8/25 (32%), Positives = 16/25 (64%)
Frame = -3
Query: 190 QFSVLHYLERHHQFDCCRNEHLNEN 116
QF+V+HY ++ +C + L+E+
Sbjct: 293 QFAVVHYFTKYGSGECYFSSDLSES 317
>AY350618-1|AAQ57660.1| 425|Apis mellifera complementary sex
determiner protein.
Length = 425
Score = 23.0 bits (47), Expect = 1.8
Identities = 13/49 (26%), Positives = 20/49 (40%), Gaps = 1/49 (2%)
Frame = +1
Query: 172 SEEQKIVDPSKDRTKIIPVET-SIRYMQSTAYQQTYENNFVWLFYRRNH 315
S+E KI+ + K + Y Y Y NN+ L+Y N+
Sbjct: 309 SKEPKIISSLSNNYKYSNYNNYNNNYNNYNNYNNNYNNNYKKLYYNINY 357
>M29491-1|AAA27726.1| 79|Apis mellifera protein ( Bee
homeobox-containing gene,partial cds, clone H17. ).
Length = 79
Score = 22.6 bits (46), Expect = 2.4
Identities = 9/29 (31%), Positives = 16/29 (55%)
Frame = +2
Query: 332 REKRESLVSEMA*FLLVIHVLFAETNIWY 418
REK+ ++E A F +H+ + IW+
Sbjct: 29 REKQYLTIAERAEFSSSLHLTETQVKIWF 57
>AY921579-1|AAX14899.1| 996|Apis mellifera ephrin receptor protein.
Length = 996
Score = 22.6 bits (46), Expect = 2.4
Identities = 10/36 (27%), Positives = 22/36 (61%)
Frame = -1
Query: 390 TWITSRNHAISDTRLSRFSRSQPTSVITTIKQPNKV 283
T +TS + ++ ++SR++ S S +TT++ +V
Sbjct: 922 TQLTSVSEWLASIKMSRYAESFERSGVTTLEAAARV 957
>AY395073-1|AAQ96729.1| 203|Apis mellifera GABA neurotransmitter
transporter-1A protein.
Length = 203
Score = 22.2 bits (45), Expect = 3.2
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = -1
Query: 123 TKIYNFIHKCSINIPN 76
TK +NFI CS+N N
Sbjct: 126 TKHHNFIKVCSVNDVN 141
>U70841-1|AAC47455.1| 377|Apis mellifera ultraviolet sensitive
opsin protein.
Length = 377
Score = 21.0 bits (42), Expect = 7.4
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +2
Query: 119 FVQVFVSTAIKLMMALKVVKNRKLLTPLRTEL 214
F+ + T + + V NR+LLTP+ T L
Sbjct: 289 FLFLLAWTPYATVALIGVYGNRELLTPVSTML 320
>AF004168-1|AAC13417.1| 377|Apis mellifera blue-sensitive opsin
protein.
Length = 377
Score = 21.0 bits (42), Expect = 7.4
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +2
Query: 119 FVQVFVSTAIKLMMALKVVKNRKLLTPLRTEL 214
F+ + T + + V NR+LLTP+ T L
Sbjct: 289 FLFLLAWTPYATVALIGVYGNRELLTPVSTML 320
>DQ667188-1|ABG75740.1| 383|Apis mellifera histamine-gated chloride
channel protein.
Length = 383
Score = 20.6 bits (41), Expect = 9.8
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = -3
Query: 502 KDQSQRRPVTVQYSEI*IAQAILYFCDPV 416
+++S RP TVQY +A + D V
Sbjct: 334 RNRSPVRPATVQYDTCCQGRATAIYIDKV 362
>DQ325103-1|ABD14117.1| 182|Apis mellifera complementary sex
determiner protein.
Length = 182
Score = 20.6 bits (41), Expect = 9.8
Identities = 12/61 (19%), Positives = 23/61 (37%)
Frame = +1
Query: 133 RFYSNQTDDGAQGSEEQKIVDPSKDRTKIIPVETSIRYMQSTAYQQTYENNFVWLFYRRN 312
R Y + + S ++ + S++ I + + Y Y Y N L+Y N
Sbjct: 54 REYRKYRETSKERSRDRTERERSREPKIISSLSNNYNYSNYNNYNNNYNNYNKKLYYNIN 113
Query: 313 H 315
+
Sbjct: 114 Y 114
>AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic
acetylcholine receptorApisa2 subunit protein.
Length = 541
Score = 20.6 bits (41), Expect = 9.8
Identities = 8/34 (23%), Positives = 17/34 (50%)
Frame = +2
Query: 377 LVIHVLFAETNIWYWITEIQNCLSNLYLTILDSY 478
+ ++ ++Y + I C+S YL++L Y
Sbjct: 225 IFFNITLRRKTLFYTVNLIVPCVSISYLSVLAFY 258
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 144,879
Number of Sequences: 438
Number of extensions: 3239
Number of successful extensions: 13
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14109465
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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