Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0007_C13
(576 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0021 - 133549-133628,133780-133824,133850-133858,134513-13... 32 0.38
05_03_0664 - 16762121-16762637,16762704-16763331,16763418-16763637 30 1.5
10_02_0128 + 5567202-5568107,5568587-5568968,5570356-5570423,557... 29 2.7
05_04_0305 + 20052813-20053996,20055774-20055861,20056470-200565... 28 4.6
03_05_0884 - 28487013-28487271,28487355-28487516,28487594-284878... 28 4.6
02_02_0604 - 12064451-12065683,12065729-12065827,12065858-120659... 28 4.6
02_04_0516 + 23593088-23593116,23593209-23593336,23593527-235937... 28 6.1
01_06_1617 - 38678668-38678925,38679015-38679117,38680629-38681290 28 6.1
01_06_1224 - 35508842-35510404 28 6.1
01_06_1112 + 34606171-34606266,34607170-34607231,34607932-346080... 28 6.1
04_04_1633 + 34928139-34928511,34928700-34928774,34929385-349294... 27 8.1
01_01_0662 - 5052390-5053022,5053182-5053319,5053429-5053656,505... 27 8.1
>07_01_0021 -
133549-133628,133780-133824,133850-133858,134513-134656,
140098-140391,141324-141908,142034-142198,142364-142406
Length = 454
Score = 31.9 bits (69), Expect = 0.38
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = -1
Query: 549 ISNTCSNSLSIVFILRSCSRFSSSICTKGF 460
ISN N + + F+LR+C RF+S +C F
Sbjct: 257 ISNCNVNGVLVFFMLRNCLRFNSPVCPLSF 286
>05_03_0664 - 16762121-16762637,16762704-16763331,16763418-16763637
Length = 454
Score = 29.9 bits (64), Expect = 1.5
Identities = 16/44 (36%), Positives = 20/44 (45%)
Frame = +2
Query: 92 EFPTSTGEEGEGADATRALRARVPFAVVGANTVIEQDGRRIRGR 223
E P +T EG TR R R+PFA G E++ GR
Sbjct: 64 ELPAATAATTEGRTTTRRWRGRLPFAANGDGEEEEEECDVFSGR 107
>10_02_0128 +
5567202-5568107,5568587-5568968,5570356-5570423,
5570899-5571034,5571206-5571283,5571623-5571747
Length = 564
Score = 29.1 bits (62), Expect = 2.7
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +2
Query: 428 QGLMNSFMTIWNPLVQMEEEKREHDLK 508
Q MN+++ +W P + +E E +EH K
Sbjct: 441 QHKMNNYVNVWKPAMLVENELQEHQRK 467
>05_04_0305 +
20052813-20053996,20055774-20055861,20056470-20056522,
20056585-20056615
Length = 451
Score = 28.3 bits (60), Expect = 4.6
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Frame = +2
Query: 116 EGEGADATRALRARVPFAVVGANTVIEQDGRR---IRGRKYPWGIAEVENLEHCDFL 277
EGE D RA+ +PF G + ++ +R IR +P + E N+ C FL
Sbjct: 358 EGEVPDVLRAINGEIPFEGFGLGELEKKKPQRQEKIRSGAWPC-LEEQPNMRTCTFL 413
>03_05_0884 - 28487013-28487271,28487355-28487516,28487594-28487802,
28488490-28488630,28488876-28489071,28489207-28489379,
28490095-28490142,28490301-28490378,28490526-28490792,
28491689-28491842,28491928-28492064,28492459-28492536,
28493039-28493216,28493589-28493803,28494063-28494422,
28494497-28494973,28495561-28495665,28495838-28496020,
28496105-28496263,28496937-28497154,28497737-28497905,
28498262-28498568,28498699-28498826,28498902-28499060,
28499194-28499364,28500258-28500376,28500604-28500853,
28501007-28501759
Length = 1950
Score = 28.3 bits (60), Expect = 4.6
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +3
Query: 204 DDAYVDGSTLGVSRKWKIWSTVISWH 281
DD V+G LG +R+ I++ ++ WH
Sbjct: 1528 DDKLVEGYLLGAARRSNIFAHILIWH 1553
>02_02_0604 -
12064451-12065683,12065729-12065827,12065858-12065955,
12066782-12066924,12067233-12067729
Length = 689
Score = 28.3 bits (60), Expect = 4.6
Identities = 17/54 (31%), Positives = 26/54 (48%)
Frame = +2
Query: 245 EVENLEHCDFLALRNMVIRTHLQDLKDVTSSVHYENYRCRKLAGLSHDGRPHRI 406
E LE RN+V R+ LQD+K + ++ ++ R L+G D P I
Sbjct: 138 ETMGLEQKGEYVFRNLVWRSFLQDVKQESQVINPKHLRYLDLSGSDMDVLPSSI 191
>02_04_0516 +
23593088-23593116,23593209-23593336,23593527-23593714,
23593861-23593919,23594997-23595345,23596081-23596333,
23596404-23597476
Length = 692
Score = 27.9 bits (59), Expect = 6.1
Identities = 11/40 (27%), Positives = 25/40 (62%)
Frame = +2
Query: 455 IWNPLVQMEEEKREHDLKMKTMESELEQVFEMKVREKRAK 574
IWNP+V +++K++ K K + + ++ + K ++K+ K
Sbjct: 61 IWNPVVMKKKKKKKKKKKKKKKKKKKKKNKKKKKKKKKKK 100
>01_06_1617 - 38678668-38678925,38679015-38679117,38680629-38681290
Length = 340
Score = 27.9 bits (59), Expect = 6.1
Identities = 17/69 (24%), Positives = 31/69 (44%)
Frame = +1
Query: 313 GLEGRDQFRAL*ELSLPQTGRTIPRRKAASHQL*QFMPARTDEQFHDNMESFGTNGGRET 492
GL G + ++A+ E LP + +PR+K+ + TD+Q N + T
Sbjct: 247 GLRGPEGWQAIQEKYLPPSVHVVPRKKSKESEDSDVSADGTDDQLEVNGKLLATPNSSVV 306
Query: 493 GTRSQNENN 519
T + E++
Sbjct: 307 NTGNGAEDS 315
>01_06_1224 - 35508842-35510404
Length = 520
Score = 27.9 bits (59), Expect = 6.1
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = -2
Query: 338 RNWSRPSSPEGGSVSPCCGVPRNHSA 261
R P+ P+GGS SP G+ RN+++
Sbjct: 358 READNPNPPDGGSTSPDSGLIRNNAS 383
>01_06_1112 +
34606171-34606266,34607170-34607231,34607932-34608019,
34608104-34608165,34608246-34608342,34608499-34608930,
34609042-34610061,34610151-34610282,34610354-34610470,
34610982-34611062,34611321-34611447,34611547-34611592,
34611663-34611708
Length = 801
Score = 27.9 bits (59), Expect = 6.1
Identities = 15/34 (44%), Positives = 18/34 (52%)
Frame = -2
Query: 323 PSSPEGGSVSPCCGVPRNHSAPNFPLPRYPKGTS 222
PSS + G SP RN S+ N P R+P TS
Sbjct: 235 PSSQDTGYSSPSIHHSRNVSSENPPSHRHPNATS 268
>04_04_1633 +
34928139-34928511,34928700-34928774,34929385-34929483,
34929736-34929908,34929990-34930066,34930182-34930301,
34930385-34930472,34930610-34930716,34930814-34930871
Length = 389
Score = 27.5 bits (58), Expect = 8.1
Identities = 13/44 (29%), Positives = 24/44 (54%)
Frame = +2
Query: 419 LCPQGLMNSFMTIWNPLVQMEEEKREHDLKMKTMESELEQVFEM 550
LC + L+ +F+ I +PLV+ + ++K M E +Q E+
Sbjct: 304 LCKRRLLEAFVLIEHPLVKKFHREEMSYRQIKDMAHEYQQTLEL 347
>01_01_0662 -
5052390-5053022,5053182-5053319,5053429-5053656,
5053736-5054035,5054568-5054636
Length = 455
Score = 27.5 bits (58), Expect = 8.1
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = +3
Query: 216 VDGSTLGVSRKWKIWSTVISWHSATW 293
V+G G RKWK+W + H + W
Sbjct: 31 VNGRGGGKGRKWKLWRSSSGDHGSLW 56
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,017,061
Number of Sequences: 37544
Number of extensions: 351072
Number of successful extensions: 1210
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1210
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1340735508
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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