Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_C13
         (576 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    24   0.94 
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    24   0.94 
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   2.9  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             23   2.9  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    22   5.0  
AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.     21   8.7  

>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 24.2 bits (50), Expect = 0.94
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -3

Query: 256 IFHFRDTPRVLPSTYASSVLLYHGV 182
           +FH RDTP V  S    +++L  GV
Sbjct: 537 LFHHRDTPVVRASGRELTIILLAGV 561


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 24.2 bits (50), Expect = 0.94
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -3

Query: 256 IFHFRDTPRVLPSTYASSVLLYHGV 182
           +FH RDTP V  S    +++L  GV
Sbjct: 627 LFHHRDTPVVRASGRELTIILLAGV 651


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = -1

Query: 570 ARFSRTFISNTCSNSLSIVFILRSCSRFSSSICTKGF 460
           A+ S +  SNTCSNS S      S SR S+   + G+
Sbjct: 10  AKVSDSGYSNTCSNSQSQRSSGSSISRNSNRSESSGY 46



 Score = 21.0 bits (42), Expect = 8.7
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +2

Query: 158 VPFAVVGANTVIEQDGRRIRGRKYPWGI 241
           +PF      TVI+ +G   R + Y +GI
Sbjct: 352 LPFIKDIYETVIKLEGASFRSKPYRFGI 379


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = -1

Query: 570 ARFSRTFISNTCSNSLSIVFILRSCSRFSSSICTKGF 460
           A+ S +  SNTCSNS S      S SR S+   + G+
Sbjct: 10  AKVSDSGYSNTCSNSQSQRSSGSSISRNSNRSESSGY 46


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
            protein.
          Length = 1143

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -2

Query: 266  SAPNFPLPRYPKGTSVHV 213
            SAPNF +P  PK   + V
Sbjct: 954  SAPNFYMPSEPKAPMILV 971


>AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.
          Length = 238

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +2

Query: 158 VPFAVVGANTVIEQDGRRIRGRKYPWGI 241
           +PF      TVI+ +G   R + Y +GI
Sbjct: 58  LPFIKDIYETVIKLEGASFRSKPYRFGI 85


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 158,585
Number of Sequences: 438
Number of extensions: 3050
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16626408
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)