Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_C12
         (517 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0346 - 17776871-17781445                                         29   2.2  
06_03_0588 + 22567820-22570802,22570917-22571269                       28   5.1  
12_02_0343 - 17748882-17753396                                         27   6.8  

>12_02_0346 - 17776871-17781445
          Length = 1524

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +2

Query: 122 TLRKHILYHGQFDVLSSGCEFSVIIHNYVLRITNTKMC 235
           +LR   L    +DV    C FS ++H   LRI +++MC
Sbjct: 669 SLRVIFLSGASYDVGDVLCNFSELVHLRYLRIKDSRMC 706


>06_03_0588 + 22567820-22570802,22570917-22571269
          Length = 1111

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 13/25 (52%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
 Frame = -1

Query: 154 LPV-I*NVFSQSIHKNIGHNHLSGG 83
           +PV I  +FS S H ++ HN+LSGG
Sbjct: 577 IPVHIFKIFSLSEHLDLSHNYLSGG 601


>12_02_0343 - 17748882-17753396
          Length = 1504

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +2

Query: 122 TLRKHILYHGQFDVLSSGCEFSVIIHNYVLRITNTKMC 235
           +LR   L    +DV    C FS ++H   LRI ++ MC
Sbjct: 670 SLRVIFLSGASYDVGDVLCNFSELVHLRYLRIEDSGMC 707


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,359,302
Number of Sequences: 37544
Number of extensions: 242294
Number of successful extensions: 450
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 445
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 450
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)