Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0007_C12
(517 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC022444-1|AAH22444.1| 288|Homo sapiens ribosomal protein L6 pr... 30 5.5
BC018748-1|AAH18748.1| 441|Homo sapiens zinc finger and BTB dom... 30 5.5
AF323460-1|AAL55969.1| 441|Homo sapiens bioref protein. 30 5.5
AB046792-1|BAB13398.1| 492|Homo sapiens KIAA1572 protein protein. 30 5.5
D17554-1|BAA04491.1| 288|Homo sapiens DNA-binding protein TAXRE... 29 7.3
BC104826-1|AAI04827.1| 288|Homo sapiens ribosomal protein L6 pr... 29 7.3
BC104824-1|AAI04825.1| 288|Homo sapiens ribosomal protein L6 pr... 29 7.3
BC071912-1|AAH71912.1| 288|Homo sapiens ribosomal protein L6 pr... 29 7.3
BC032299-1|AAH32299.1| 288|Homo sapiens ribosomal protein L6 pr... 29 7.3
BC031009-1|AAH31009.1| 288|Homo sapiens ribosomal protein L6 pr... 29 7.3
BC020679-1|AAH20679.1| 288|Homo sapiens ribosomal protein L6 pr... 29 7.3
BC004138-1|AAH04138.1| 288|Homo sapiens ribosomal protein L6 pr... 29 7.3
AF261087-1|AAF99680.1| 289|Homo sapiens DNA-binding protein TAX... 29 7.3
AB042820-1|BAB17292.1| 288|Homo sapiens ribosomal protein L6 pr... 29 7.3
>BC022444-1|AAH22444.1| 288|Homo sapiens ribosomal protein L6
protein.
Length = 288
Score = 29.9 bits (64), Expect = 5.5
Identities = 14/25 (56%), Positives = 18/25 (72%)
Frame = +1
Query: 436 RNYDLGNGVLRFSKSRMYHKKAIYK 510
RN L GV R+S+S MY +KA+YK
Sbjct: 46 RNPVLVRGVGRYSRSAMYSRKAMYK 70
>BC018748-1|AAH18748.1| 441|Homo sapiens zinc finger and BTB domain
containing 26 protein.
Length = 441
Score = 29.9 bits (64), Expect = 5.5
Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 4/71 (5%)
Frame = +3
Query: 33 LLYHNILHKC---YRS*ENYPPDK*LCPIFLCILCENTFYITGSL-TFYQVVVNLV*LSI 200
L +H+ KC +R ENY + +F+C+LC TF G+L +V +
Sbjct: 269 LQWHHQCPKCTRVFRHLENYANHLKMHKLFMCLLCGKTFTQKGNLHRHMRVHAGIKPFQC 328
Query: 201 TMC*ELPTQRC 233
+C + +Q+C
Sbjct: 329 KICGKTFSQKC 339
>AF323460-1|AAL55969.1| 441|Homo sapiens bioref protein.
Length = 441
Score = 29.9 bits (64), Expect = 5.5
Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 4/71 (5%)
Frame = +3
Query: 33 LLYHNILHKC---YRS*ENYPPDK*LCPIFLCILCENTFYITGSL-TFYQVVVNLV*LSI 200
L +H+ KC +R ENY + +F+C+LC TF G+L +V +
Sbjct: 269 LQWHHQCPKCTRVFRHLENYANHLKMHKLFMCLLCGKTFTQKGNLHRHMRVHAGIKPFQC 328
Query: 201 TMC*ELPTQRC 233
+C + +Q+C
Sbjct: 329 KICGKTFSQKC 339
>AB046792-1|BAB13398.1| 492|Homo sapiens KIAA1572 protein protein.
Length = 492
Score = 29.9 bits (64), Expect = 5.5
Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 4/71 (5%)
Frame = +3
Query: 33 LLYHNILHKC---YRS*ENYPPDK*LCPIFLCILCENTFYITGSL-TFYQVVVNLV*LSI 200
L +H+ KC +R ENY + +F+C+LC TF G+L +V +
Sbjct: 320 LQWHHQCPKCTRVFRHLENYANHLKMHKLFMCLLCGKTFTQKGNLHRHMRVHAGIKPFQC 379
Query: 201 TMC*ELPTQRC 233
+C + +Q+C
Sbjct: 380 KICGKTFSQKC 390
>D17554-1|BAA04491.1| 288|Homo sapiens DNA-binding protein
TAXREB107 protein.
Length = 288
Score = 29.5 bits (63), Expect = 7.3
Identities = 13/25 (52%), Positives = 18/25 (72%)
Frame = +1
Query: 436 RNYDLGNGVLRFSKSRMYHKKAIYK 510
RN L G+ R+S+S MY +KA+YK
Sbjct: 46 RNPVLVRGIGRYSRSAMYSRKAMYK 70
>BC104826-1|AAI04827.1| 288|Homo sapiens ribosomal protein L6
protein.
Length = 288
Score = 29.5 bits (63), Expect = 7.3
Identities = 13/25 (52%), Positives = 18/25 (72%)
Frame = +1
Query: 436 RNYDLGNGVLRFSKSRMYHKKAIYK 510
RN L G+ R+S+S MY +KA+YK
Sbjct: 46 RNPVLVRGIGRYSRSAMYSRKAMYK 70
>BC104824-1|AAI04825.1| 288|Homo sapiens ribosomal protein L6
protein.
Length = 288
Score = 29.5 bits (63), Expect = 7.3
Identities = 13/25 (52%), Positives = 18/25 (72%)
Frame = +1
Query: 436 RNYDLGNGVLRFSKSRMYHKKAIYK 510
RN L G+ R+S+S MY +KA+YK
Sbjct: 46 RNPVLVRGIGRYSRSAMYSRKAMYK 70
>BC071912-1|AAH71912.1| 288|Homo sapiens ribosomal protein L6
protein.
Length = 288
Score = 29.5 bits (63), Expect = 7.3
Identities = 13/25 (52%), Positives = 18/25 (72%)
Frame = +1
Query: 436 RNYDLGNGVLRFSKSRMYHKKAIYK 510
RN L G+ R+S+S MY +KA+YK
Sbjct: 46 RNPVLVRGIGRYSRSAMYSRKAMYK 70
>BC032299-1|AAH32299.1| 288|Homo sapiens ribosomal protein L6
protein.
Length = 288
Score = 29.5 bits (63), Expect = 7.3
Identities = 13/25 (52%), Positives = 18/25 (72%)
Frame = +1
Query: 436 RNYDLGNGVLRFSKSRMYHKKAIYK 510
RN L G+ R+S+S MY +KA+YK
Sbjct: 46 RNPVLVRGIGRYSRSAMYSRKAMYK 70
>BC031009-1|AAH31009.1| 288|Homo sapiens ribosomal protein L6
protein.
Length = 288
Score = 29.5 bits (63), Expect = 7.3
Identities = 13/25 (52%), Positives = 18/25 (72%)
Frame = +1
Query: 436 RNYDLGNGVLRFSKSRMYHKKAIYK 510
RN L G+ R+S+S MY +KA+YK
Sbjct: 46 RNPVLVRGIGRYSRSAMYSRKAMYK 70
>BC020679-1|AAH20679.1| 288|Homo sapiens ribosomal protein L6
protein.
Length = 288
Score = 29.5 bits (63), Expect = 7.3
Identities = 13/25 (52%), Positives = 18/25 (72%)
Frame = +1
Query: 436 RNYDLGNGVLRFSKSRMYHKKAIYK 510
RN L G+ R+S+S MY +KA+YK
Sbjct: 46 RNPVLVRGIGRYSRSAMYSRKAMYK 70
>BC004138-1|AAH04138.1| 288|Homo sapiens ribosomal protein L6
protein.
Length = 288
Score = 29.5 bits (63), Expect = 7.3
Identities = 13/25 (52%), Positives = 18/25 (72%)
Frame = +1
Query: 436 RNYDLGNGVLRFSKSRMYHKKAIYK 510
RN L G+ R+S+S MY +KA+YK
Sbjct: 46 RNPVLVRGIGRYSRSAMYSRKAMYK 70
>AF261087-1|AAF99680.1| 289|Homo sapiens DNA-binding protein
TAXREB107 protein.
Length = 289
Score = 29.5 bits (63), Expect = 7.3
Identities = 13/25 (52%), Positives = 18/25 (72%)
Frame = +1
Query: 436 RNYDLGNGVLRFSKSRMYHKKAIYK 510
RN L G+ R+S+S MY +KA+YK
Sbjct: 46 RNPVLVRGIGRYSRSAMYSRKAMYK 70
>AB042820-1|BAB17292.1| 288|Homo sapiens ribosomal protein L6
protein.
Length = 288
Score = 29.5 bits (63), Expect = 7.3
Identities = 13/25 (52%), Positives = 18/25 (72%)
Frame = +1
Query: 436 RNYDLGNGVLRFSKSRMYHKKAIYK 510
RN L G+ R+S+S MY +KA+YK
Sbjct: 46 RNPVLVRGIGRYSRSAMYSRKAMYK 70
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 73,377,801
Number of Sequences: 237096
Number of extensions: 1383817
Number of successful extensions: 5670
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 5605
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5670
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4876707572
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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