Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_C12
         (517 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00036-4|AAK29850.1|  217|Caenorhabditis elegans Ribosomal prote...    31   0.65 
U29380-18|ABB88224.1|  733|Caenorhabditis elegans Zygote defecti...    27   6.0  
U29380-17|AAA68733.3|  736|Caenorhabditis elegans Zygote defecti...    27   6.0  
U29380-16|AAS60254.1|  761|Caenorhabditis elegans Zygote defecti...    27   6.0  
U29380-15|AAS60253.1|  777|Caenorhabditis elegans Zygote defecti...    27   6.0  
AY487140-1|AAR32790.1|  733|Caenorhabditis elegans centrosome at...    27   6.0  

>U00036-4|AAK29850.1|  217|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 6 protein.
          Length = 217

 Score = 30.7 bits (66), Expect = 0.65
 Identities = 14/21 (66%), Positives = 16/21 (76%)
 Frame = +1

Query: 436 RNYDLGNGVLRFSKSRMYHKK 498
           RN+DL  GVLRFS SR+  KK
Sbjct: 12  RNFDLSPGVLRFSASRLRLKK 32


>U29380-18|ABB88224.1|  733|Caenorhabditis elegans Zygote defective:
           embryonic lethalprotein 12, isoform d protein.
          Length = 733

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 11/40 (27%), Positives = 23/40 (57%)
 Frame = -2

Query: 186 LNSQPLDRTSNCP*YKMCFRKVYTKILDTITCLEDNFLNS 67
           L + P +RT+N   ++ C RK++ K+ D +  +    ++S
Sbjct: 93  LETMPENRTTNIMVFRSCTRKLWRKMFDYVNHINRTVVSS 132


>U29380-17|AAA68733.3|  736|Caenorhabditis elegans Zygote defective:
           embryonic lethalprotein 12, isoform a protein.
          Length = 736

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 11/40 (27%), Positives = 23/40 (57%)
 Frame = -2

Query: 186 LNSQPLDRTSNCP*YKMCFRKVYTKILDTITCLEDNFLNS 67
           L + P +RT+N   ++ C RK++ K+ D +  +    ++S
Sbjct: 93  LETMPENRTTNIMVFRSCTRKLWRKMFDYVNHINRTVVSS 132


>U29380-16|AAS60254.1|  761|Caenorhabditis elegans Zygote defective:
           embryonic lethalprotein 12, isoform c protein.
          Length = 761

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 11/40 (27%), Positives = 23/40 (57%)
 Frame = -2

Query: 186 LNSQPLDRTSNCP*YKMCFRKVYTKILDTITCLEDNFLNS 67
           L + P +RT+N   ++ C RK++ K+ D +  +    ++S
Sbjct: 93  LETMPENRTTNIMVFRSCTRKLWRKMFDYVNHINRTVVSS 132


>U29380-15|AAS60253.1|  777|Caenorhabditis elegans Zygote defective:
           embryonic lethalprotein 12, isoform b protein.
          Length = 777

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 11/40 (27%), Positives = 23/40 (57%)
 Frame = -2

Query: 186 LNSQPLDRTSNCP*YKMCFRKVYTKILDTITCLEDNFLNS 67
           L + P +RT+N   ++ C RK++ K+ D +  +    ++S
Sbjct: 93  LETMPENRTTNIMVFRSCTRKLWRKMFDYVNHINRTVVSS 132


>AY487140-1|AAR32790.1|  733|Caenorhabditis elegans centrosome
           attachment protein A protein.
          Length = 733

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 11/40 (27%), Positives = 23/40 (57%)
 Frame = -2

Query: 186 LNSQPLDRTSNCP*YKMCFRKVYTKILDTITCLEDNFLNS 67
           L + P +RT+N   ++ C RK++ K+ D +  +    ++S
Sbjct: 93  LETMPENRTTNIMVFRSCTRKLWRKMFDYVNHINRTVVSS 132


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,954,613
Number of Sequences: 27780
Number of extensions: 236372
Number of successful extensions: 457
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 446
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 457
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 996506972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)