Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0007_C11
(555 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC688.04c |gst3||glutathione S-transferase |Schizosaccharomyce... 36 0.004
SPAC15A10.03c |rhp54|rad54|Rad54 homolog Rhp54|Schizosaccharomyc... 27 2.5
SPBC17D1.02 |||diphthamide biosynthesis protein |Schizosaccharom... 27 2.5
SPBC646.13 |sds23|psp1, moc1|inducer of sexual development Sds23... 26 3.2
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S... 26 4.3
SPCC338.18 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||... 26 4.3
SPAC13C5.04 |||glutamine amidotransferase |Schizosaccharomyces p... 26 4.3
SPBC32H8.06 |mug93||TPR repeat protein, meiotically spliced|Schi... 25 5.7
SPBC1921.02 |rad60||DNA repair protein Rad60 |Schizosaccharomyce... 25 5.7
SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2 |Schiz... 25 7.5
SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo... 25 9.9
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha... 25 9.9
SPAC2G11.05c |||BRO1 domain protein|Schizosaccharomyces pombe|ch... 25 9.9
>SPAC688.04c |gst3||glutathione S-transferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 242
Score = 35.9 bits (79), Expect = 0.004
Identities = 18/46 (39%), Positives = 25/46 (54%)
Frame = +1
Query: 196 PEIKPKTPFGQMPLLEIDGKQYAQSIAISRYLGRKYGLAGADLEED 333
P +P G+ P++ DG Y +S AI +L RKYG + EED
Sbjct: 40 PAYTKLSPLGKSPIVVDDGVTYIESAAILEHLVRKYGPSFKPSEED 85
>SPAC15A10.03c |rhp54|rad54|Rad54 homolog Rhp54|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 852
Score = 26.6 bits (56), Expect = 2.5
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +1
Query: 400 EKDEAVKAKKLAEFRETKYQFLIEKLNEILQK 495
EKD+ KLAE + +F+I + N+IL K
Sbjct: 485 EKDKENGDAKLAELAKIVNRFIIRRTNDILSK 516
>SPBC17D1.02 |||diphthamide biosynthesis protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 503
Score = 26.6 bits (56), Expect = 2.5
Identities = 13/53 (24%), Positives = 28/53 (52%)
Frame = +1
Query: 277 ISRYLGRKYGLAGADLEEDFEIDQNVEFLNDIRANAAAVHYEKDEAVKAKKLA 435
+ + +G + G DL E +EI++ V+F+ N+ A+ + + + K+A
Sbjct: 19 LEKEIGETVKIEG-DLVEVYEINRTVDFIKSGNYNSVALQFPDEHLADSGKVA 70
>SPBC646.13 |sds23|psp1, moc1|inducer of sexual development
Sds23/Moc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 408
Score = 26.2 bits (55), Expect = 3.2
Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
Frame = -2
Query: 173 LSSNSCPP*ASNIRGPSPSAFTGK**KTTFGIVSFYEVI-FKYLKYKSSPTTLPH 12
+ S SCPP N SP + G G+VS ++I Y K + PH
Sbjct: 325 VQSPSCPPSPKNNAHLSPGSMGGVKVNQLLGVVSLTDIISVLYAHMKGTLPPAPH 379
>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
Mok11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2397
Score = 25.8 bits (54), Expect = 4.3
Identities = 15/53 (28%), Positives = 26/53 (49%)
Frame = +1
Query: 142 LAYGGQEFEDKRISMDQWPEIKPKTPFGQMPLLEIDGKQYAQSIAISRYLGRK 300
L Y E++ + S + +I P G +P L +DG Y + I+ Y+ R+
Sbjct: 672 LVYPYDEYQLEASS--HFSQISNTEPMGCLPELGLDGYGYKLFVPINEYIPRR 722
>SPCC338.18 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 117
Score = 25.8 bits (54), Expect = 4.3
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +1
Query: 199 EIKPKTPFGQMPLLEIDGK 255
E+K ++P GQ P LE DG+
Sbjct: 11 ELKDESPIGQSPHLENDGR 29
>SPAC13C5.04 |||glutamine amidotransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 248
Score = 25.8 bits (54), Expect = 4.3
Identities = 22/69 (31%), Positives = 30/69 (43%), Gaps = 3/69 (4%)
Frame = -1
Query: 456 VFGLAEFCQFLGFH--RLVFLVMDGGGVCTNIVKEL-HVLINLEVFL*VCTSEAVLATEV 286
+ G E C+F F+ R T +V + VL EVF EA+ +E
Sbjct: 172 LLGSTEDCEFQIFYKPRQALTFQGHPEFSTEVVNTMVKVLRGTEVFTEQQKEEALKRSEN 231
Query: 285 PADGDALSV 259
PAD D L+V
Sbjct: 232 PADNDFLAV 240
>SPBC32H8.06 |mug93||TPR repeat protein, meiotically
spliced|Schizosaccharomyces pombe|chr 2|||Manual
Length = 383
Score = 25.4 bits (53), Expect = 5.7
Identities = 20/75 (26%), Positives = 30/75 (40%)
Frame = +1
Query: 307 LAGADLEEDFEIDQNVEFLNDIRANAAAVHYEKDEAVKAKKLAEFRETKYQFLIEKLNEI 486
LA D E E+D N ++ V+Y E + +L R Q +L
Sbjct: 93 LANRDWEHSLELDPNNTYIQKSLHRLKEVYYIYRECAETWQLRHLRVASSQ----QLPVG 148
Query: 487 LQKNGGHIALGKLTW 531
L+K +I GK+ W
Sbjct: 149 LRKQYPNIIRGKIWW 163
>SPBC1921.02 |rad60||DNA repair protein Rad60 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 406
Score = 25.4 bits (53), Expect = 5.7
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = +1
Query: 310 AGADLEEDFEIDQNVEFLNDIRANAAAVHYEKDEA 414
+ +D EE+ E+D N + L I A H E A
Sbjct: 30 SSSDSEEESELDTNKQALEHINAQKNITHNENKSA 64
>SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 25.0 bits (52), Expect = 7.5
Identities = 19/77 (24%), Positives = 37/77 (48%)
Frame = +2
Query: 233 RCWKLTVNSTLRASPSAGTSVASTASLVQT*RKTSRLIRTWSSLTIFVQTPPPSITRKTR 412
RC + + TLR ++G S + S+ ++S +I S T + + P S+ R
Sbjct: 391 RCLEEDIEPTLRLDHASGLSWLTRRSVFTAILESSLIINPLHS-TSLLSSQPCSLCGFNR 449
Query: 413 R*KPRNWQNSARPNTSS 463
R ++ +RP+++S
Sbjct: 450 TQPLRQFEFRSRPDSTS 466
>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1388
Score = 24.6 bits (51), Expect = 9.9
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = -3
Query: 163 IPARRRLATSADPRRAPSRGNSKKLRSALLVFMKLSSNI 47
+ A R+ ++A+ + + N+K R ALL+ K NI
Sbjct: 1042 VTASRKAVSAAEKDLSNDQSNNKSSRKALLITFKGVKNI 1080
>SPBC23E6.09 |ssn6||transcriptional corepressor
Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1102
Score = 24.6 bits (51), Expect = 9.9
Identities = 11/35 (31%), Positives = 21/35 (60%)
Frame = -3
Query: 154 RRRLATSADPRRAPSRGNSKKLRSALLVFMKLSSN 50
R + +DP+++ R +SKKL ++ +V SS+
Sbjct: 865 RTSASNESDPKKSTQRDSSKKLENSTVVSGSPSSS 899
>SPAC2G11.05c |||BRO1 domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 701
Score = 24.6 bits (51), Expect = 9.9
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = +1
Query: 340 IDQNVEFLNDIRANAAAVHYEKDEAVKAKKLAEFRETKYQFLIE 471
I QNVE L N+ V E E K ++ E KY+FL++
Sbjct: 596 IIQNVEKLKSY-LNSFKVQAECSEISKILSFSQETEKKYKFLLQ 638
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,174,295
Number of Sequences: 5004
Number of extensions: 43750
Number of successful extensions: 122
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 231978230
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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