Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_C11
         (555 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M29491-1|AAA27726.1|   79|Apis mellifera protein ( Bee homeobox-...    23   2.1  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    23   2.7  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            21   8.4  

>M29491-1|AAA27726.1|   79|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H17. ).
          Length = 79

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +1

Query: 196 PEIKPKTPFGQMPLLEIDGK 255
           P  KP+TPF    LL ++ K
Sbjct: 8   PNRKPRTPFTTQQLLSLEKK 27


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +1

Query: 421 AKKLAEFRETKYQFLIEKLNEILQKNGGHI 510
           A K  +F E     L E+  +++ +NG HI
Sbjct: 311 ANKNQKFYERGIMMLPERWQKVIDQNGQHI 340


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +1

Query: 304 GLAGADLEEDFEIDQNVEFLNDIRANAAA 390
           GL   D  +++   + V+FLND+ A   A
Sbjct: 174 GLHDLDQSQEYVRSKLVDFLNDLVAIGVA 202


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 148,227
Number of Sequences: 438
Number of extensions: 3097
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15949830
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)