Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_C10
         (544 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13G1.09 |||bystin-family protein|Schizosaccharomyces pombe|c...    29   0.44 
SPAC22H10.10 |alp21|sto1|tubulin specific chaperone cofactor E|S...    28   0.77 
SPAC1A6.04c |plb1||phospholipase B homolog Plb1|Schizosaccharomy...    27   1.4  
SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr 1|...    25   7.2  
SPAC1A6.05c |||triacylglycerol lipase|Schizosaccharomyces pombe|...    25   9.5  
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch...    25   9.5  
SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p...    25   9.5  

>SPBC13G1.09 |||bystin-family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 449

 Score = 29.1 bits (62), Expect = 0.44
 Identities = 15/41 (36%), Positives = 26/41 (63%)
 Frame = +2

Query: 212 VYYEFFYTVILPTAVQDMLRSTAGDKRIKINIYLAIKYALY 334
           V  + F TVI+   V+D +R    +K++  ++Y+A+K ALY
Sbjct: 257 VQAQHFLTVIILERVRDDIRE---NKKLNYHLYMALKKALY 294


>SPAC22H10.10 |alp21|sto1|tubulin specific chaperone cofactor
           E|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 511

 Score = 28.3 bits (60), Expect = 0.77
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = +2

Query: 176 FPYETCCRFQEMVYYEFFYTVILPTAVQ 259
           FP++ C  F E +Y ++ Y+  LP++V+
Sbjct: 65  FPFDPCRTFLEALYEKYSYSSPLPSSVE 92


>SPAC1A6.04c |plb1||phospholipase B homolog Plb1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 613

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
 Frame = +2

Query: 386 SSSGKMCYTCHSFGVCNVKIFVLFTKLLRVYTDTYNKNITFVCLYVPGNL-RNG 544
           SS+G       +FG         F K++R + D+  KN   +  Y+ GN   NG
Sbjct: 317 SSNGSCVINYDNFGFMMGASSTYFNKIMRNFNDSSTKNGRIIQQYLKGNFSENG 370


>SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 927

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 12/44 (27%), Positives = 22/44 (50%)
 Frame = +2

Query: 305 IYLAIKYALYCKKNVAKK*LIQSRKTGSSSGKMCYTCHSFGVCN 436
           ++L++  A YCKK+  K   +Q+  T  S   +      +G+ N
Sbjct: 821 LFLSVYIAEYCKKHDKKSMPVQAFATRISGNSIDVYISEYGISN 864


>SPAC1A6.05c |||triacylglycerol lipase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 483

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +2

Query: 449 VLFTKLLRVYTDTYNKNITFV 511
           VLFTKL  V T  Y+ +IT +
Sbjct: 400 VLFTKLQSVITQKYSGDITII 420


>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2609

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +2

Query: 434  NVKIFVLFTKLLRVYTDTYNKNITFVCLYVPGN 532
            N KI V   KL R+Y +  ++NI   C Y   N
Sbjct: 2413 NGKILVK-DKLSRIYNENSDENILCSCFYTGAN 2444


>SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 425

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 10/42 (23%), Positives = 17/42 (40%)
 Frame = +2

Query: 314 AIKYALYCKKNVAKK*LIQSRKTGSSSGKMCYTCHSFGVCNV 439
           A +Y  YCK  + +    + +       K  Y C   G+C +
Sbjct: 193 AAQYCKYCKNCMGRYYCNKCKLWDDDPNKSSYHCDDCGICRI 234


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,391,248
Number of Sequences: 5004
Number of extensions: 52414
Number of successful extensions: 131
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 223909422
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)