Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_C10
         (544 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    23   2.7  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    23   2.7  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   3.5  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   3.5  
DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    22   4.6  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    21   8.1  

>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 13/35 (37%), Positives = 16/35 (45%), Gaps = 6/35 (17%)
 Frame = -2

Query: 213 TIS*KRQHVSYGNR*ALP------VREPTPVRTWH 127
           T+  K  HV YG   A P       R+P P+  WH
Sbjct: 53  TVLDKEVHVFYGIPFAKPPIGPLRFRKPLPIEPWH 87


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 13/35 (37%), Positives = 16/35 (45%), Gaps = 6/35 (17%)
 Frame = -2

Query: 213 TIS*KRQHVSYGNR*ALP------VREPTPVRTWH 127
           T+  K  HV YG   A P       R+P P+  WH
Sbjct: 53  TVLDKEVHVFYGIPFAKPPIGPLRFRKPLPIEPWH 87


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 16/45 (35%), Positives = 20/45 (44%)
 Frame = +2

Query: 32  LRARTN*AYLSNGLI*LLIIVCSGGTGPGACLCQVRTGVGSRTGR 166
           LR R     LSNG    L++        G  LCQ   G+GS  G+
Sbjct: 757 LRERAYTKILSNGT---LLLQHVKEDREGFYLCQASNGIGSGIGK 798


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 16/45 (35%), Positives = 20/45 (44%)
 Frame = +2

Query: 32  LRARTN*AYLSNGLI*LLIIVCSGGTGPGACLCQVRTGVGSRTGR 166
           LR R     LSNG    L++        G  LCQ   G+GS  G+
Sbjct: 753 LRERAYTKILSNGT---LLLQHVKEDREGFYLCQASNGIGSGIGK 794


>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = -1

Query: 451 NKYFDITNTKAMTSVTHFTGAGPC 380
           NK +++  T A+  + HF   G C
Sbjct: 85  NKEYNMLRTTAINVIRHFGIVGEC 108


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 7/12 (58%), Positives = 12/12 (100%)
 Frame = +1

Query: 169 SSISVRDVLPLS 204
           SS+S++D+LPL+
Sbjct: 2   SSLSLKDILPLN 13


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,567
Number of Sequences: 438
Number of extensions: 3947
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15459066
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)