Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0007_C09
(559 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyce... 208 4e-55
SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyce... 60 2e-10
SPAC607.03c |snu13||U3 snoRNP-associated protein Snu13|Schizosac... 56 3e-09
SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease XPF... 30 0.27
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam... 27 1.9
SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit Pa... 26 4.3
SPBC28E12.03 |rga4||GTPase activating protein Rga4|Schizosacchar... 26 4.3
SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase Vas1|Schizos... 25 5.7
SPAC23C11.09 |||alanine-tRNA ligase |Schizosaccharomyces pombe|c... 25 5.7
SPBC2F12.11c |rep2||transcriptional activator Rep2|Schizosacchar... 25 5.7
SPAC1851.03 |ckb1||CK2 family regulatory subunit |Schizosaccharo... 25 7.5
SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|... 25 7.5
SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual 25 7.5
SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated prote... 25 10.0
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 25 10.0
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ... 25 10.0
SPBP8B7.28c |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 25 10.0
>SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 259
Score = 208 bits (508), Expect = 4e-55
Identities = 99/184 (53%), Positives = 132/184 (71%), Gaps = 1/184 (0%)
Frame = +3
Query: 9 SRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPETEAVRK 188
SRFV+WP+YIR+QR++ +L RLKVPP I QF +TLDK TA +FK+L KYRPET A +K
Sbjct: 47 SRFVKWPEYIRLQRRRKILNLRLKVPPAIAQFQKTLDKNTATQVFKLLNKYRPETAAEKK 106
Query: 189 ERLKKAAEANV-AKKDEPPPKRPNTLRAGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFL 365
+RL AEA K + K+P ++ G N V L+E KKA+LV+IA DVDPIELV+FL
Sbjct: 107 QRLVAEAEAVANGKSAQDVSKKPYNVKYGLNHVVALIEAKKAKLVLIASDVDPIELVVFL 166
Query: 366 PALCRKMGVPYCIVKGKSRLGALVHRKTCTSVALTNVESGDRAAFSKVVEAIKTNFNERY 545
PALC+KMGVPY IVK K+RLG ++H+KT +A+T V D+ + +V A+ NF+ +Y
Sbjct: 167 PALCKKMGVPYAIVKNKARLGTVIHQKTAAVLAVTEVREEDKNELASIVSAVDANFSAKY 226
Query: 546 EELR 557
+E R
Sbjct: 227 DESR 230
>SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 154
Score = 60.1 bits (139), Expect = 2e-10
Identities = 40/134 (29%), Positives = 60/134 (44%)
Frame = +3
Query: 153 EKYRPETEAVRKERLKKAAEANVAKKDEPPPKRPNTLRAGTNTVTKLVEKKKAQLVVIAH 332
+ Y P + K K + K + K+ + LR G V K V K + LV++A
Sbjct: 19 DSYLPALMPIAKPLAPKKLNKKMMKTVKKASKQKHILR-GVKEVVKAVRKGEKGLVILAG 77
Query: 333 DVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVHRKTCTSVALTNVESGDRAAFSKVV 512
D+ P++++ +P LC VPY K LG + K TS + V G + SKV
Sbjct: 78 DISPMDVISHIPVLCEDNNVPYLYTVSKELLGEASNTKRPTSCVMI-VPGGKKKDMSKVE 136
Query: 513 EAIKTNFNERYEEL 554
E + E YEE+
Sbjct: 137 E-----YKESYEEI 145
>SPAC607.03c |snu13||U3 snoRNP-associated protein
Snu13|Schizosaccharomyces pombe|chr 1|||Manual
Length = 125
Score = 56.4 bits (130), Expect = 3e-09
Identities = 29/77 (37%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Frame = +3
Query: 261 LRAGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLG-ALV 437
LR G N TK + + ++ +V+A D +PIE++L LP LC VPY V K+ LG A
Sbjct: 32 LRKGANEATKTLNRGISEFIVMAADTEPIEILLHLPLLCEDKNVPYVFVPSKAALGRACG 91
Query: 438 HRKTCTSVALTNVESGD 488
+ S ++T E+ D
Sbjct: 92 VSRPVISASITTNEASD 108
>SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease
XPF|Schizosaccharomyces pombe|chr 3|||Manual
Length = 892
Score = 29.9 bits (64), Expect = 0.27
Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Frame = +3
Query: 141 FKILEKYRPETEAVRKERLKKAAEA-NVAKKDEPPPKRPNTLRAGTNTVTK 290
F+ E+YR +++++K K EA N + PP + +R G N ++
Sbjct: 430 FQWREQYRKMSKSIKKPEPSKEREASNTTSRKGVPPSKRRRVRGGNNATSR 480
>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
Mam3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1082
Score = 27.1 bits (57), Expect = 1.9
Identities = 18/79 (22%), Positives = 36/79 (45%)
Frame = -1
Query: 517 ASTTFEKAARSPDSTFVRATLVQVLRCTSAPNRDLPFTIQYGTPILRQSAGRKSTSSIGS 338
++T++ + ST ++L+ V ++ T +Q + KS+ +G
Sbjct: 587 SNTSYTSSLIPSSSTDYSSSLITVCSNVTSEISSTSLASLISTLTSQQISSNKSSEFVGQ 646
Query: 337 TS*AMTTSCAFFFSTSLVT 281
T+ TTS + F+T+L T
Sbjct: 647 TTTEYTTSGSVGFTTTLAT 665
>SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit
Par2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 627
Score = 25.8 bits (54), Expect = 4.3
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +3
Query: 54 KAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILE 155
KAVL LK P IN F + L + +F++LE
Sbjct: 463 KAVLTGILKYWPRINSFKELLFLNEIEDIFEVLE 496
>SPBC28E12.03 |rga4||GTPase activating protein
Rga4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 933
Score = 25.8 bits (54), Expect = 4.3
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +1
Query: 67 SVVSKCRRQSTSSPRH*IKPQPKVCSRSWRNTG 165
S V R Q+TSSP + ++PQ KV + + G
Sbjct: 182 SSVLSGRMQNTSSPTNSLRPQLKVQTNGYETPG 214
>SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase
Vas1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 950
Score = 25.4 bits (53), Expect = 5.7
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = -1
Query: 424 NRDLPFTIQYGTPILRQSAGRKSTSSIGS 338
+ +LPF P++R S GRK + S+G+
Sbjct: 535 SNELPFKEIILHPLVRDSEGRKMSKSLGN 563
>SPAC23C11.09 |||alanine-tRNA ligase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 959
Score = 25.4 bits (53), Expect = 5.7
Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
Frame = +3
Query: 93 INQFTQTLDKTTAKGLFKILEKYRPETEAVRKERLKKAAEANVAKKDEPP--PKRPNTLR 266
I F + AKG+ +I+ TEA R RL +A +AK ++ P P + L+
Sbjct: 736 IKDFVILEENGIAKGIRRIVAV--TSTEANRVSRLANEFDARIAKLEKMPFSPAKEAELK 793
Query: 267 AGTNTVTKLV 296
+ ++KLV
Sbjct: 794 KISVDLSKLV 803
>SPBC2F12.11c |rep2||transcriptional activator
Rep2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 219
Score = 25.4 bits (53), Expect = 5.7
Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Frame = +1
Query: 73 VSKCRRQSTSSPRH*IKPQPK-VCSRSW-RNTGQKLRQSGKSV*RKPPKPMLLRKMSRHR 246
+++ RQ T P+ + Q K + +R R+ Q+ R++ S R K L R+M R R
Sbjct: 103 IAQLIRQQTDPPQIIHRKQDKGLMARVLSRSKKQEERENHSSDARDAIKSALRRRM-RRR 161
Query: 247 KGQTPYALEPT 279
+G+ AL PT
Sbjct: 162 EGRVQKALRPT 172
>SPAC1851.03 |ckb1||CK2 family regulatory subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 231
Score = 25.0 bits (52), Expect = 7.5
Identities = 9/13 (69%), Positives = 13/13 (100%)
Frame = +3
Query: 126 TAKGLFKILEKYR 164
TA+GL+K+LEKY+
Sbjct: 94 TAQGLYKMLEKYK 106
>SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|chr
3|||Manual
Length = 828
Score = 25.0 bits (52), Expect = 7.5
Identities = 15/63 (23%), Positives = 29/63 (46%)
Frame = +3
Query: 153 EKYRPETEAVRKERLKKAAEANVAKKDEPPPKRPNTLRAGTNTVTKLVEKKKAQLVVIAH 332
E R E+E L + N + E +P+T+ GT+ + + E K+ + ++
Sbjct: 668 ENKRSESELTMSNVLSNEGDRN-EEGSEINSSQPSTINHGTDHINIVSENKETTVSLLHG 726
Query: 333 DVD 341
DV+
Sbjct: 727 DVE 729
>SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 973
Score = 25.0 bits (52), Expect = 7.5
Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Frame = -1
Query: 406 TIQYGTPILRQSAGRKS-TSSIGSTS*AMTTSCAFFFSTSLVTVLVPA 266
T+ I+ +AG + T+S+GS+S A T + A ST V +VP+
Sbjct: 780 TVSGTVMIVEPTAGYVTVTTSLGSSSYATTVATASGTSTGTVLQVVPS 827
>SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated protein
Mug36|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1646
Score = 24.6 bits (51), Expect = 10.0
Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Frame = -3
Query: 509 YLREGGTVSRLHICKSD---ARASLTVYKRTQS*FTLHDTVRDSHLTAKRWQEEHKF 348
++++ G S L C++ +S T + + S F HDT S+ QE+H +
Sbjct: 595 FVKKIGCQSELFNCENSDWTKVSSSTAFHLSNSLFETHDTTGTSNFAVSIQQEKHYY 651
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 24.6 bits (51), Expect = 10.0
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = +3
Query: 72 RLKVPPPINQFTQTLDKTTAKGLFKILEKYRPETEAVRKERL 197
RL + P+ F KTTAK L + + RP+ E +R L
Sbjct: 455 RLSLNRPVRVFVDN-KKTTAKLLTQEFVRVRPQRELLRPAML 495
>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 2493
Score = 24.6 bits (51), Expect = 10.0
Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Frame = +1
Query: 361 SCQR-FAVRWESRTVS*RVNHDWVRLYTVRL 450
SC++ F+ WES H WVRL RL
Sbjct: 2232 SCEKEFSKIWESMRYLILFKHAWVRLSVSRL 2262
>SPBP8B7.28c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 215
Score = 24.6 bits (51), Expect = 10.0
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +1
Query: 97 TSSPRH*IKPQPKVCSRSWRNTGQKLRQSGKSV 195
+ + RH + P+ ++C S RN G +S K V
Sbjct: 106 SKAQRHVLDPRCQICVHSQRNDGDDNLESDKFV 138
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,362,328
Number of Sequences: 5004
Number of extensions: 46500
Number of successful extensions: 156
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 233995432
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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