Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0007_C08
(451 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U40799-7|AAA81485.1| 208|Caenorhabditis elegans Ribosomal prote... 204 3e-53
U66260-1|AAB07021.1| 1540|Caenorhabditis elegans multidrug resis... 33 0.13
U41554-8|ABA03118.1| 1534|Caenorhabditis elegans Multidrug resis... 33 0.13
U41554-7|AAM69107.1| 1534|Caenorhabditis elegans Multidrug resis... 33 0.13
U41554-6|AAL06032.1| 1534|Caenorhabditis elegans Multidrug resis... 33 0.13
U41554-5|AAD31550.2| 1528|Caenorhabditis elegans Multidrug resis... 33 0.13
AB199793-1|BAD88409.1| 1534|Caenorhabditis elegans multidrug res... 33 0.13
U41992-1|AAA83354.2| 514|Caenorhabditis elegans Importin alpha ... 30 0.68
AF040995-1|AAB97171.1| 514|Caenorhabditis elegans importin alph... 30 0.68
AF005266-1|AAQ13407.1| 423|Caenorhabditis elegans importin alph... 30 0.68
AL117205-7|CAB55160.1| 293|Caenorhabditis elegans Hypothetical ... 28 3.6
U20861-9|AAN84854.1| 192|Caenorhabditis elegans Hypothetical pr... 27 4.8
AF016674-1|AAB66132.1| 160|Caenorhabditis elegans Hypothetical ... 27 4.8
>U40799-7|AAA81485.1| 208|Caenorhabditis elegans Ribosomal protein,
small subunitprotein 8 protein.
Length = 208
Score = 204 bits (497), Expect = 3e-53
Identities = 92/128 (71%), Positives = 106/128 (82%)
Frame = +2
Query: 32 MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTKLGPQRIHLVRSRGGNTKYRALRL 211
MGISRD WHKR TG + KKRK+ELGRPAANTK+G R+ LVR+RGGN KYRALRL
Sbjct: 1 MGISRDSWHKRYKTGATQPVPHKKRKFELGRPAANTKIGAHRVRLVRTRGGNEKYRALRL 60
Query: 212 DTGNFAWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYLLP 391
D+GNF+W SE +TRKTRI+D +YNA+NNELVRTKTLVK AI+ VDA PFRQWYE+HY LP
Sbjct: 61 DSGNFSWASEQTTRKTRIVDTMYNATNNELVRTKTLVKGAIISVDAAPFRQWYEAHYALP 120
Query: 392 LGRKKGAQ 415
L RKK A+
Sbjct: 121 LARKKNAK 128
>U66260-1|AAB07021.1| 1540|Caenorhabditis elegans multidrug
resistance related protein1 protein.
Length = 1540
Score = 32.7 bits (71), Expect = 0.13
Identities = 14/35 (40%), Positives = 23/35 (65%)
Frame = +2
Query: 200 ALRLDTGNFAWGSECSTRKTRIIDVVYNASNNELV 304
A+++D G+FAWGS+ RK + D+ +N +LV
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645
>U41554-8|ABA03118.1| 1534|Caenorhabditis elegans Multidrug
resistance protein familyprotein 1, isoform e protein.
Length = 1534
Score = 32.7 bits (71), Expect = 0.13
Identities = 14/35 (40%), Positives = 23/35 (65%)
Frame = +2
Query: 200 ALRLDTGNFAWGSECSTRKTRIIDVVYNASNNELV 304
A+++D G+FAWGS+ RK + D+ +N +LV
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645
>U41554-7|AAM69107.1| 1534|Caenorhabditis elegans Multidrug
resistance protein familyprotein 1, isoform c protein.
Length = 1534
Score = 32.7 bits (71), Expect = 0.13
Identities = 14/35 (40%), Positives = 23/35 (65%)
Frame = +2
Query: 200 ALRLDTGNFAWGSECSTRKTRIIDVVYNASNNELV 304
A+++D G+FAWGS+ RK + D+ +N +LV
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645
>U41554-6|AAL06032.1| 1534|Caenorhabditis elegans Multidrug
resistance protein familyprotein 1, isoform b protein.
Length = 1534
Score = 32.7 bits (71), Expect = 0.13
Identities = 14/35 (40%), Positives = 23/35 (65%)
Frame = +2
Query: 200 ALRLDTGNFAWGSECSTRKTRIIDVVYNASNNELV 304
A+++D G+FAWGS+ RK + D+ +N +LV
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645
>U41554-5|AAD31550.2| 1528|Caenorhabditis elegans Multidrug
resistance protein familyprotein 1, isoform a protein.
Length = 1528
Score = 32.7 bits (71), Expect = 0.13
Identities = 14/35 (40%), Positives = 23/35 (65%)
Frame = +2
Query: 200 ALRLDTGNFAWGSECSTRKTRIIDVVYNASNNELV 304
A+++D G+FAWGS+ RK + D+ +N +LV
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645
>AB199793-1|BAD88409.1| 1534|Caenorhabditis elegans multidrug
resistance-associatedprotein protein.
Length = 1534
Score = 32.7 bits (71), Expect = 0.13
Identities = 14/35 (40%), Positives = 23/35 (65%)
Frame = +2
Query: 200 ALRLDTGNFAWGSECSTRKTRIIDVVYNASNNELV 304
A+++D G+FAWGS+ RK + D+ +N +LV
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645
>U41992-1|AAA83354.2| 514|Caenorhabditis elegans Importin alpha
family protein 3 protein.
Length = 514
Score = 30.3 bits (65), Expect = 0.68
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = -2
Query: 153 WGPSLVLAAGRPNSYFLFLRMGARLPPVALLLCQ*SRLIPIL 28
W S V +GRPN +++G P A+L C S++I ++
Sbjct: 383 WAISNVTISGRPNQVEQMVKLGVLRPFCAMLSCTDSQIIQVV 424
>AF040995-1|AAB97171.1| 514|Caenorhabditis elegans importin alpha 3
protein.
Length = 514
Score = 30.3 bits (65), Expect = 0.68
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = -2
Query: 153 WGPSLVLAAGRPNSYFLFLRMGARLPPVALLLCQ*SRLIPIL 28
W S V +GRPN +++G P A+L C S++I ++
Sbjct: 383 WAISNVTISGRPNQVEQMVKLGVLRPFCAMLSCTDSQIIQVV 424
>AF005266-1|AAQ13407.1| 423|Caenorhabditis elegans importin alpha-3
subunit protein.
Length = 423
Score = 30.3 bits (65), Expect = 0.68
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = -2
Query: 153 WGPSLVLAAGRPNSYFLFLRMGARLPPVALLLCQ*SRLIPIL 28
W S V +GRPN +++G P A+L C S++I ++
Sbjct: 292 WAISNVTISGRPNQVEQMVKLGVLRPFCAMLSCTDSQIIQVV 333
>AL117205-7|CAB55160.1| 293|Caenorhabditis elegans Hypothetical
protein Y116A8A.8 protein.
Length = 293
Score = 27.9 bits (59), Expect = 3.6
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = +2
Query: 242 CSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQ 364
CS + I ++A+NN ++ KT N I TPF Q
Sbjct: 51 CSIQNLMYIQKRFSANNNMIIALKTDTINEITESVCTPFEQ 91
>U20861-9|AAN84854.1| 192|Caenorhabditis elegans Hypothetical
protein C28H8.9b protein.
Length = 192
Score = 27.5 bits (58), Expect = 4.8
Identities = 12/40 (30%), Positives = 16/40 (40%)
Frame = +2
Query: 23 PAKMGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTK 142
P + G D W R+ G P++K A NTK
Sbjct: 149 PDEFGSDEDDWSSRKRRKGNLGPVQKATSSRKKNAARNTK 188
>AF016674-1|AAB66132.1| 160|Caenorhabditis elegans Hypothetical
protein C03H5.4 protein.
Length = 160
Score = 27.5 bits (58), Expect = 4.8
Identities = 14/38 (36%), Positives = 18/38 (47%)
Frame = -1
Query: 415 LGTFLPSEWQQVVAFIPLPERCGIHHDNSILYQGFGTH 302
LG LP V I RC HHD + +Y G+G +
Sbjct: 8 LGFLLPETLNTFVLEIQFMTRCMTHHD-AWIYNGYGCY 44
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,449,970
Number of Sequences: 27780
Number of extensions: 251083
Number of successful extensions: 629
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 595
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 629
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 788595652
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -