Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_C08
         (451 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8 ...   257   4e-71
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    22   3.6  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    22   3.6  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    22   3.6  
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       21   4.7  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    21   6.2  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               21   8.2  

>AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8
           protein.
          Length = 208

 Score =  257 bits (630), Expect = 4e-71
 Identities = 115/128 (89%), Positives = 123/128 (96%)
 Frame = +2

Query: 32  MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTKLGPQRIHLVRSRGGNTKYRALRL 211
           MGISRDHWHKRRATGGKR PIRKKRK+ELGRPAANTKLGPQRIH VR+RGGN KYRALRL
Sbjct: 1   MGISRDHWHKRRATGGKRKPIRKKRKFELGRPAANTKLGPQRIHTVRTRGGNKKYRALRL 60

Query: 212 DTGNFAWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYLLP 391
           DTGNF+WGSEC+TRKTRIIDVVYNASNNELVRTKTLVKNAIV +DATPFRQWYE HY+LP
Sbjct: 61  DTGNFSWGSECTTRKTRIIDVVYNASNNELVRTKTLVKNAIVTIDATPFRQWYEGHYVLP 120

Query: 392 LGRKKGAQ 415
           LGRK+GA+
Sbjct: 121 LGRKRGAK 128


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 21.8 bits (44), Expect = 3.6
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = -1

Query: 283 IINNINNTSLAG 248
           +INN NNTS+ G
Sbjct: 488 VINNRNNTSMKG 499


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.8 bits (44), Expect = 3.6
 Identities = 13/32 (40%), Positives = 15/32 (46%)
 Frame = +3

Query: 261 VLLMLFIMPLTMNWCVPKPW*RMLLSWWMPHL 356
           VL + F  P T N     PW R +   WMP L
Sbjct: 333 VLNVHFRSPSTHNM---SPWVRQVFLNWMPRL 361


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 21.8 bits (44), Expect = 3.6
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = -3

Query: 263 YESCGLNIQIPMRSFQYQD 207
           YE CGL  + PM SFQ  D
Sbjct: 653 YE-CGLRFEDPMISFQPGD 670


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 21.4 bits (43), Expect = 4.7
 Identities = 6/20 (30%), Positives = 11/20 (55%)
 Frame = +3

Query: 261 VLLMLFIMPLTMNWCVPKPW 320
           +L+   +MPL + W +   W
Sbjct: 85  LLVTFLMMPLEIGWAITVSW 104


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 21.0 bits (42), Expect = 6.2
 Identities = 10/38 (26%), Positives = 20/38 (52%)
 Frame = +2

Query: 251 RKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQ 364
           RK  + +VVY    N + +    V + I ++ A+P ++
Sbjct: 358 RKRPMHNVVYRPGENPVTQRLPAVLSRIGIILASPLKR 395


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 20.6 bits (41), Expect = 8.2
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +3

Query: 246 QPARLVLLMLFIMPLTMNW 302
           QP  L+ L+   MPL  NW
Sbjct: 491 QPEPLIELIEHWMPLLPNW 509


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 141,287
Number of Sequences: 438
Number of extensions: 3160
Number of successful extensions: 12
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11820384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)