Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_C07
         (512 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0995 + 33377933-33378000,33378099-33378327,33378410-33378451    124   4e-29
05_07_0061 + 27420442-27420506,27420619-27420847,27420968-27421009    122   2e-28
05_07_0069 + 27475072-27475136,27475237-27475465,27475532-274756...   105   3e-23
12_01_0899 - 8689125-8689383,8689540-8689826                           31   0.72 
09_04_0201 + 15543318-15543488,15543956-15544069                       27   8.8  

>02_05_0995 + 33377933-33378000,33378099-33378327,33378410-33378451
          Length = 112

 Score =  124 bits (299), Expect = 4e-29
 Identities = 59/110 (53%), Positives = 75/110 (68%)
 Frame = +2

Query: 170 RLYAKAVFTGYKRGLRNQHENTALLKIEGTKDRSDALFYAGKRCVYVYRAKKRTPIPGGP 349
           RLY +    GYKR   NQ+ENT+L++IEG   + +  +Y GKR  YVY+AK ++   GG 
Sbjct: 11  RLYVRGTILGYKRSKSNQYENTSLVQIEGVNTKEEVAWYCGKRMAYVYKAKTKS---GG- 66

Query: 350 RGKKTKLRAIWGKVTRPHGNSGGVRARFKSNLPAQAMGHRIRVMLYPSRI 499
               T  R IWGKVTRPHGNSG VRA+FKSNLP  +MG ++RV +YPS I
Sbjct: 67  ----TNYRCIWGKVTRPHGNSGVVRAKFKSNLPPASMGRKVRVFMYPSSI 112


>05_07_0061 + 27420442-27420506,27420619-27420847,27420968-27421009
          Length = 111

 Score =  122 bits (293), Expect = 2e-28
 Identities = 57/110 (51%), Positives = 75/110 (68%)
 Frame = +2

Query: 170 RLYAKAVFTGYKRGLRNQHENTALLKIEGTKDRSDALFYAGKRCVYVYRAKKRTPIPGGP 349
           RLY +    GYKR   NQ+ENT+LL+IEG   + +  +YAGKR  YVY+AK ++      
Sbjct: 10  RLYVRGTILGYKRSKSNQYENTSLLQIEGVNTKEEVGWYAGKRIAYVYKAKTKS------ 63

Query: 350 RGKKTKLRAIWGKVTRPHGNSGGVRARFKSNLPAQAMGHRIRVMLYPSRI 499
               + +R IWGKVTRPHGNSG VRA+F+SNLP  +MG ++RV +YPS I
Sbjct: 64  --NDSTIRCIWGKVTRPHGNSGVVRAKFRSNLPPTSMGKKVRVFMYPSSI 111


>05_07_0069 +
           27475072-27475136,27475237-27475465,27475532-27475630,
           27476172-27476287,27476670-27476757
          Length = 198

 Score =  105 bits (251), Expect = 3e-23
 Identities = 50/97 (51%), Positives = 65/97 (67%)
 Frame = +2

Query: 170 RLYAKAVFTGYKRGLRNQHENTALLKIEGTKDRSDALFYAGKRCVYVYRAKKRTPIPGGP 349
           RLY +    GYKR   NQ+ENT+LL+IEG   + +  +YAGKR  YVY+AK ++      
Sbjct: 10  RLYVRGTILGYKRSKSNQYENTSLLQIEGVNTKEEVGWYAGKRIAYVYKAKTKS------ 63

Query: 350 RGKKTKLRAIWGKVTRPHGNSGGVRARFKSNLPAQAM 460
               + +R IWGKVTRPHGNSG VRA+F+SNLP  +M
Sbjct: 64  --NDSTIRCIWGKVTRPHGNSGVVRAKFRSNLPPTSM 98


>12_01_0899 - 8689125-8689383,8689540-8689826
          Length = 181

 Score = 30.7 bits (66), Expect = 0.72
 Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = -3

Query: 474 RILCPMACAGRLDLNLARTP-PELPCGRVTLPQIARSLVFLPRGPP 340
           R+L P + A R  +  AR P PE PC R+ LP+    +  LP  PP
Sbjct: 17  RLLLPASGAARGAV--ARLPLPEPPCARLLLPEPPWGMAALPPEPP 60


>09_04_0201 + 15543318-15543488,15543956-15544069
          Length = 94

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = -3

Query: 399 GRVTLPQIARSLVFLPRGPPGIGVL 325
           GR+  PQ + S V  PRG PG+ VL
Sbjct: 6   GRLPRPQGSSSAVPRPRGLPGVSVL 30


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,933,955
Number of Sequences: 37544
Number of extensions: 340725
Number of successful extensions: 901
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 876
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 898
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1106928780
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)