Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_C06
         (536 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1349 + 25951445-25951774,25953301-25953639                       31   0.77 
07_03_1465 - 26729872-26730909                                         29   2.3  
04_04_0040 + 22322839-22324173                                         29   3.1  
08_01_0491 + 4290881-4291228,4291298-4291393                           28   4.1  
03_06_0776 - 36176390-36177589                                         28   5.4  
09_04_0353 + 16915618-16916934                                         27   7.2  

>07_03_1349 + 25951445-25951774,25953301-25953639
          Length = 222

 Score = 30.7 bits (66), Expect = 0.77
 Identities = 15/29 (51%), Positives = 19/29 (65%)
 Frame = +1

Query: 373 FPSAAPKIEYNRLLLHDDQSASLYPPSPA 459
           F SAA     +RLL++  QSA +YPP PA
Sbjct: 66  FSSAATTDLDHRLLVYSPQSAPVYPPPPA 94


>07_03_1465 - 26729872-26730909
          Length = 345

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 15/34 (44%), Positives = 17/34 (50%)
 Frame = -2

Query: 361 DHLRC*RCPNRAALNIVHQ*VGRWPKPTTTPSDS 260
           D  RC    + A  NIVH    RW   TT+PS S
Sbjct: 170 DLSRCFLAGDSAGGNIVHHVAQRWAASTTSPSSS 203


>04_04_0040 + 22322839-22324173
          Length = 444

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 14/50 (28%), Positives = 24/50 (48%)
 Frame = +2

Query: 296 AYSLMNNV*SCSIWTSLTPKMICLKRSRALHRRSNTIDYCCTTTSQLACT 445
           AYS + +  S  +WT   P + C K+S  +   S++  Y     S  +C+
Sbjct: 107 AYSAIVDTGSDLVWTQCKPCVDCFKQSTPVFDPSSSSTYATVPCSSASCS 156


>08_01_0491 + 4290881-4291228,4291298-4291393
          Length = 147

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
 Frame = +3

Query: 171 PQLHSPITSVTDPSGLKLAPVSLHHINNECE--SLGVVVGF 287
           P+ H    +VTD +    A  + HH+ +E +  S  VV GF
Sbjct: 78  PRPHGATAAVTDTTSAAAAAAAAHHLQHEADGGSKHVVTGF 118


>03_06_0776 - 36176390-36177589
          Length = 399

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +1

Query: 322 ELLDLDIFNTEDDLLKTFPSAAPKIEYNRLLLHDDQSAS 438
           +L+DLD+   + D  +  P +AP +  N    HDDQ A+
Sbjct: 148 DLIDLDL---DGDGHQLPPGSAPSMHRNPFFFHDDQQAA 183


>09_04_0353 + 16915618-16916934
          Length = 438

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 13/57 (22%), Positives = 23/57 (40%)
 Frame = +2

Query: 290 PAAYSLMNNV*SCSIWTSLTPKMICLKRSRALHRRSNTIDYCCTTTSQLACTHHHRP 460
           P  +S M +  S  IWT   P ++C+++       + +  Y     S   C   + P
Sbjct: 95  PRYFSAMIDTGSDLIWTQCAPCLLCVEQPTPYFEPAKSTSYASLPCSSAMCNALYSP 151


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,749,797
Number of Sequences: 37544
Number of extensions: 307020
Number of successful extensions: 789
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 776
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 789
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1186491600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)