Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_C06
         (536 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ295695-1|CAC82105.1| 2551|Homo sapiens stabilin-2 protein.           30   6.0  
D63877-1|BAA09927.1|  419|Homo sapiens KIAA0157 protein.               29   7.9  
AF022853-5|AAB83982.1| 1400|Homo sapiens multidrug resistance pr...    29   7.9  

>AJ295695-1|CAC82105.1| 2551|Homo sapiens stabilin-2 protein.
          Length = 2551

 Score = 29.9 bits (64), Expect = 6.0
 Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
 Frame = +2

Query: 119  INKNACHHGALT---GQFCPATTTLTNYIGNRSLWSETRTCEFTSH 247
            I KN C + A T   G+    ++ LT   G +SL +E R C +TS+
Sbjct: 1267 IQKNRCDNNATTIIRGRCRTCSSELTCPFGTKSLGNEKRRCIYTSY 1312


>D63877-1|BAA09927.1|  419|Homo sapiens KIAA0157 protein.
          Length = 419

 Score = 29.5 bits (63), Expect = 7.9
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +2

Query: 104 VCFHAINKNACHHGALTGQ 160
           VCFH+ N NA H G L G+
Sbjct: 17  VCFHSANSNADHEGFLLGE 35


>AF022853-5|AAB83982.1| 1400|Homo sapiens multidrug resistance
           protein protein.
          Length = 1400

 Score = 29.5 bits (63), Expect = 7.9
 Identities = 16/50 (32%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
 Frame = -2

Query: 235 LTGASFR-PEGSVTDVIGECSCGRTKLSGKGAMMASIFINCVKAHAGVQT 89
           L G +F  PEG++  V+G+  CG++ L    A++A   ++ V+ H  ++T
Sbjct: 645 LNGITFSIPEGALVAVVGQVGCGKSSL--LSALLAE--MDKVEGHVAIKT 690


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 77,685,729
Number of Sequences: 237096
Number of extensions: 1612224
Number of successful extensions: 3658
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3513
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3657
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 5273648886
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)