Samia BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_C06
         (536 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014298-2150|AAF48455.1| 2030|Drosophila melanogaster CG9198-PA...    30   1.7  
BT003554-1|AAO39558.1|  307|Drosophila melanogaster LP10544p pro...    29   5.3  
AY058485-1|AAL13714.1|  477|Drosophila melanogaster GM13341p pro...    29   5.3  
AE014297-338|AAF51964.1|  477|Drosophila melanogaster CG2100-PA ...    29   5.3  
L41342-1|AAA64873.1|  336|Drosophila melanogaster protein ( Dros...    28   7.0  
D37788-1|BAA07039.1|  336|Drosophila melanogaster RecA protein h...    28   7.0  
D17726-1|BAA04580.1|  336|Drosophila melanogaster Rad51 protein.       28   7.0  
BT001791-1|AAN71546.1|  284|Drosophila melanogaster RH24133p pro...    28   7.0  
AE014297-4533|AAN14213.1|  279|Drosophila melanogaster CG7948-PB...    28   7.0  
AE014297-4532|AAF57005.1|  336|Drosophila melanogaster CG7948-PA...    28   7.0  

>AE014298-2150|AAF48455.1| 2030|Drosophila melanogaster CG9198-PA,
           isoform A protein.
          Length = 2030

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 15/42 (35%), Positives = 24/42 (57%)
 Frame = +3

Query: 108 AFTQLIKMLAIMAPLPDSFVLPQLHSPITSVTDPSGLKLAPV 233
           AF + + ML+ + P P S+   Q H+   S+ DP+G +L  V
Sbjct: 608 AFEEELHMLSPIQPQPVSYTQRQAHNVCKSLRDPAGNRLTLV 649


>BT003554-1|AAO39558.1|  307|Drosophila melanogaster LP10544p
           protein.
          Length = 307

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 16/34 (47%), Positives = 18/34 (52%)
 Frame = +1

Query: 295 GLLTDEQCLELLDLDIFNTEDDLLKTFPSAAPKI 396
           GL+ DE  L   D D   T DDLLK  P+   KI
Sbjct: 263 GLVMDELKLLWADSDFQLTHDDLLKWIPNVLKKI 296


>AY058485-1|AAL13714.1|  477|Drosophila melanogaster GM13341p
           protein.
          Length = 477

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 16/34 (47%), Positives = 18/34 (52%)
 Frame = +1

Query: 295 GLLTDEQCLELLDLDIFNTEDDLLKTFPSAAPKI 396
           GL+ DE  L   D D   T DDLLK  P+   KI
Sbjct: 433 GLVMDELKLLWADSDFQLTHDDLLKWIPNVLKKI 466


>AE014297-338|AAF51964.1|  477|Drosophila melanogaster CG2100-PA
           protein.
          Length = 477

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 16/34 (47%), Positives = 18/34 (52%)
 Frame = +1

Query: 295 GLLTDEQCLELLDLDIFNTEDDLLKTFPSAAPKI 396
           GL+ DE  L   D D   T DDLLK  P+   KI
Sbjct: 433 GLVMDELKLLWADSDFQLTHDDLLKWIPNVLKKI 466


>L41342-1|AAA64873.1|  336|Drosophila melanogaster protein (
           Drosophila melanogaster(clone pDmR2210) RAD51 homolog
           gene, complete cds. ).
          Length = 336

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -2

Query: 238 KLTGASFRPEGSVTDVIGECSCGRTKL 158
           KL G      GS+T++ GE  CG+T+L
Sbjct: 108 KLLGGGIET-GSITEIFGEFRCGKTQL 133


>D37788-1|BAA07039.1|  336|Drosophila melanogaster RecA protein
           homologue protein.
          Length = 336

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -2

Query: 238 KLTGASFRPEGSVTDVIGECSCGRTKL 158
           KL G      GS+T++ GE  CG+T+L
Sbjct: 108 KLLGGGIET-GSITEIFGEFRCGKTQL 133


>D17726-1|BAA04580.1|  336|Drosophila melanogaster Rad51 protein.
          Length = 336

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -2

Query: 238 KLTGASFRPEGSVTDVIGECSCGRTKL 158
           KL G      GS+T++ GE  CG+T+L
Sbjct: 108 KLLGGGIET-GSITEIFGEFRCGKTQL 133


>BT001791-1|AAN71546.1|  284|Drosophila melanogaster RH24133p
           protein.
          Length = 284

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -2

Query: 238 KLTGASFRPEGSVTDVIGECSCGRTKL 158
           KL G      GS+T++ GE  CG+T+L
Sbjct: 51  KLLGGGIET-GSITEIFGEFRCGKTQL 76


>AE014297-4533|AAN14213.1|  279|Drosophila melanogaster CG7948-PB,
           isoform B protein.
          Length = 279

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -2

Query: 238 KLTGASFRPEGSVTDVIGECSCGRTKL 158
           KL G      GS+T++ GE  CG+T+L
Sbjct: 51  KLLGGGIET-GSITEIFGEFRCGKTQL 76


>AE014297-4532|AAF57005.1|  336|Drosophila melanogaster CG7948-PA,
           isoform A protein.
          Length = 336

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -2

Query: 238 KLTGASFRPEGSVTDVIGECSCGRTKL 158
           KL G      GS+T++ GE  CG+T+L
Sbjct: 108 KLLGGGIET-GSITEIFGEFRCGKTQL 133


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,603,529
Number of Sequences: 53049
Number of extensions: 524579
Number of successful extensions: 1290
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1239
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1289
length of database: 24,988,368
effective HSP length: 80
effective length of database: 20,744,448
effective search space used: 2032955904
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)