Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_C05
         (491 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_07_0079 + 12665141-12665167,12665613-12665702,12665783-126663...    27   8.2  
06_03_0552 + 22040547-22040579,22040655-22040855,22040939-220411...    27   8.2  

>10_07_0079 +
           12665141-12665167,12665613-12665702,12665783-12666310,
           12666341-12667741
          Length = 681

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +2

Query: 326 KNYDNKKSLKHIRFYKIRPLFM 391
           +N DNKKS +H+ F K+  L +
Sbjct: 466 RNMDNKKSSRHVAFPKLHELHL 487


>06_03_0552 +
           22040547-22040579,22040655-22040855,22040939-22041115,
           22041791-22041984,22042277-22042539,22042964-22043073
          Length = 325

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
 Frame = +2

Query: 335 DNKKSLK--HIRFYKIRPLFMDVFRIIFDG*NMTTHPLTCTRN 457
           + +K +K  H++F K  P F+D  RIIF   ++     +C R+
Sbjct: 82  NREKGIKCNHVKFRKQGPKFLDDLRIIFGKSHVNGASASCPRD 124


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,564,268
Number of Sequences: 37544
Number of extensions: 212311
Number of successful extensions: 327
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 322
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 327
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1023611560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)