Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_C05
         (491 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83238-11|CAE11318.1|  326|Caenorhabditis elegans Hypothetical p...    28   3.2  
Z74031-2|CAA98454.2|  568|Caenorhabditis elegans Hypothetical pr...    28   4.2  
Z81454-8|CAD60404.1|  330|Caenorhabditis elegans Hypothetical pr...    27   5.6  
AL110490-5|CAB54441.1|  424|Caenorhabditis elegans Hypothetical ...    27   5.6  
Z79753-1|CAB02086.1|  249|Caenorhabditis elegans Hypothetical pr...    27   7.4  
U40060-7|AAA81145.2|  391|Caenorhabditis elegans Hypothetical pr...    27   7.4  
Z93381-3|CAB07606.1|  362|Caenorhabditis elegans Hypothetical pr...    27   9.8  
Z79605-5|CAB01907.2|  316|Caenorhabditis elegans Hypothetical pr...    27   9.8  
Z69792-5|CAA93668.3| 1410|Caenorhabditis elegans Hypothetical pr...    27   9.8  
AL022270-3|CAB63434.2| 1410|Caenorhabditis elegans Hypothetical ...    27   9.8  

>Z83238-11|CAE11318.1|  326|Caenorhabditis elegans Hypothetical
           protein T08G3.12 protein.
          Length = 326

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = -2

Query: 256 GIFTFIRTKVLYFFFTTCKDPSKSTSMQKIT 164
           GI TF   +VLYFF+ T K   KS  + + T
Sbjct: 202 GILTFTTVQVLYFFYHTVKYLFKSKIISEST 232


>Z74031-2|CAA98454.2|  568|Caenorhabditis elegans Hypothetical
           protein F32D8.2 protein.
          Length = 568

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = -3

Query: 243 SFVQKSFTFFSQHVKTHQNLRQCKKSLYKLTHE 145
           +F+Q   T F+Q VKTH+ +R  +   YK+ +E
Sbjct: 472 NFLQTLRTRFTQEVKTHKCVRSFELEDYKIFYE 504


>Z81454-8|CAD60404.1|  330|Caenorhabditis elegans Hypothetical
           protein B0391.12 protein.
          Length = 330

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 14/44 (31%), Positives = 27/44 (61%)
 Frame = +2

Query: 341 KKSLKHIRFYKIRPLFMDVFRIIFDG*NMTTHPLTCTRNNLFNI 472
           KKS K +  YKI  +++ VF I++   ++ T P   +++++F I
Sbjct: 28  KKSPKKLGNYKILMIYIAVFEILYSLLDLLTTPECFSKDSVFLI 71


>AL110490-5|CAB54441.1|  424|Caenorhabditis elegans Hypothetical
           protein Y48B6A.5 protein.
          Length = 424

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 19/43 (44%), Positives = 21/43 (48%), Gaps = 5/43 (11%)
 Frame = -2

Query: 298 KENYRT*LRSSPFTGIFTF-----IRTKVLYFFFTTCKDPSKS 185
           K N  T L ++P TGI        IR  V   FF TC DP KS
Sbjct: 340 KTNADTHLIAAPTTGIILSGQSMGIRVGVTDNFFKTCADPGKS 382


>Z79753-1|CAB02086.1|  249|Caenorhabditis elegans Hypothetical
           protein F20G2.1 protein.
          Length = 249

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -2

Query: 244 FIRTKVLYFFFTTCKDPSKSTSMQKI 167
           FI+ K +     TC+DPS +T +  I
Sbjct: 23  FIKNKDVQIIIGTCRDPSNATELNSI 48


>U40060-7|AAA81145.2|  391|Caenorhabditis elegans Hypothetical
           protein F38B6.7 protein.
          Length = 391

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = -2

Query: 364 SNMFKRLFIIIVFRTKTRI 308
           S   +RL+I++VF+TK RI
Sbjct: 329 SRQIRRLYIVLVFQTKNRI 347


>Z93381-3|CAB07606.1|  362|Caenorhabditis elegans Hypothetical
           protein F28G4.3 protein.
          Length = 362

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = -1

Query: 281 IVTLVAIHWYFHIHSYKSPLLFFHNM*RPIKIYVNAKNHC 162
           I T++ I  Y  + S  SP    H+   P++ + N KN+C
Sbjct: 16  ICTVILIAEYSRVRSPTSP----HSQRSPVRFFKNGKNNC 51


>Z79605-5|CAB01907.2|  316|Caenorhabditis elegans Hypothetical
           protein ZK678.6 protein.
          Length = 316

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -1

Query: 260 HWYFHIHSYKSPLLFFHNM 204
           +W+FH+H + S LL  H +
Sbjct: 106 YWFFHMHFWTSALLTVHRL 124


>Z69792-5|CAA93668.3| 1410|Caenorhabditis elegans Hypothetical protein
            F40E10.4 protein.
          Length = 1410

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = +2

Query: 209  CEKKVKDFCTNECENTSEWRRA*LCPIIFFLNYDPCFCPKNYDNK 343
            CEK + D   ++CEN  +      C  +  +N   C CP  Y+ K
Sbjct: 944  CEKNIDDCVNSKCENGGK------C--VDLINSYRCDCPMEYEGK 980


>AL022270-3|CAB63434.2| 1410|Caenorhabditis elegans Hypothetical
            protein F40E10.4 protein.
          Length = 1410

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = +2

Query: 209  CEKKVKDFCTNECENTSEWRRA*LCPIIFFLNYDPCFCPKNYDNK 343
            CEK + D   ++CEN  +      C  +  +N   C CP  Y+ K
Sbjct: 944  CEKNIDDCVNSKCENGGK------C--VDLINSYRCDCPMEYEGK 980


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,277,526
Number of Sequences: 27780
Number of extensions: 237460
Number of successful extensions: 571
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 555
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 571
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 924715866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)