Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_C04
         (549 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1 |Sc...    27   2.4  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    26   4.2  
SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolo...    26   4.2  
SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces p...    25   5.6  
SPCC1020.13c ||SPCC14G10.05|phospholipase |Schizosaccharomyces p...    25   5.6  
SPCC191.02c ||SPCC417.14c|acetyl-CoA ligase |Schizosaccharomyces...    25   7.3  
SPAC5H10.10 |||NADPH dehydrogenase |Schizosaccharomyces pombe|ch...    25   7.3  
SPBC15D4.10c |amo1||nuclear rim protein Amo1|Schizosaccharomyces...    25   7.3  
SPAC1687.15 |gsk3|skp1|serine/threonine protein kinase Gsk3|Schi...    25   7.3  
SPCC584.15c |||arrestin/PY protein 2|Schizosaccharomyces pombe|c...    25   7.3  
SPAC694.06c |mrc1||mediator of replication checkpoint 1 |Schizos...    25   7.3  
SPAC6B12.11 |drc1|sld1|DNA replication protein Drc1|Schizosaccha...    25   9.7  
SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein T...    25   9.7  

>SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1233

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 15/41 (36%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
 Frame = -3

Query: 154 VGDMQSVWRAVELVIRTTNTQRAALLHILNVVPESISL-KH 35
           VGD++S  +++   + + +T+RA LL  +N   ES+ L KH
Sbjct: 422 VGDLESKIKSLHESVSSLDTERADLLAKINEKIESLELEKH 462


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 4924

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = +2

Query: 53  FWYDIKDV*QRSTLGVRCPYHQFHSSPHALHIPNMFHLYHRHPAV 187
           F++ + D    +T    C  + +HS+   L    +FHL+  H AV
Sbjct: 61  FFFPVSDDVIPNTNPKNCQCYLYHSTNSQLEPLEVFHLHKLHSAV 105


>SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolog
           3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 925

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = -2

Query: 332 RFEFHRDRLVLLSSRAFGFSANFRSWATWLSCDAGKELL 216
           R E  R  LVL+S R +  S       T+L+C A K+L+
Sbjct: 269 RIEVLRLLLVLISKRLYRSSEVASHTLTYLTCVANKQLI 307


>SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1040

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +1

Query: 103 LSLSPVPQLSTRFAYPQHVPL 165
           L L+P+P+L+ R    +HVPL
Sbjct: 664 LQLNPLPELTPRKVLLEHVPL 684


>SPCC1020.13c ||SPCC14G10.05|phospholipase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 669

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 11/37 (29%), Positives = 23/37 (62%)
 Frame = -2

Query: 476 KFAHGEGEIDSVSMLSLLVGPVVAGLIMHLHYHTEHI 366
           +F+  + EIDS+  +  L+G V++ +  ++ +H E I
Sbjct: 329 RFSIEDIEIDSIPAVRRLLGDVMSDIPYYMSHHKESI 365


>SPCC191.02c ||SPCC417.14c|acetyl-CoA ligase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 662

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
 Frame = -2

Query: 458 GEIDSVSMLSLLVGPVVAGLIMH-LHY 381
           GE+D +  LS L  P V   I+H +HY
Sbjct: 630 GEVDQIGDLSTLADPKVVEHIIHAVHY 656


>SPAC5H10.10 |||NADPH dehydrogenase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 392

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 10/31 (32%), Positives = 13/31 (41%)
 Frame = -1

Query: 372 AYLTTRNPRQRWNXXXXXXXXXSATFFKGVW 280
           AYL    PRQ WN         +   +K +W
Sbjct: 281 AYLHAIEPRQYWNGHVHITQEKNTLIYKNLW 311


>SPBC15D4.10c |amo1||nuclear rim protein Amo1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 475

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +3

Query: 405 CHYGTD*ERQH*YRINFTLSMGKLNIDGTQNLDRHPWW 518
           C YGT+ + QH    N   +  K+N+   +N  R P W
Sbjct: 12  CRYGTNCKNQHTVPSNGQNAFSKVNVFRPEN-GRPPIW 48


>SPAC1687.15 |gsk3|skp1|serine/threonine protein kinase
           Gsk3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 387

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = -3

Query: 478 LSLPMERVKLILYQCCRS 425
           LS+PM  VKL +YQ  RS
Sbjct: 127 LSMPMLEVKLYIYQLLRS 144


>SPCC584.15c |||arrestin/PY protein 2|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 594

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +1

Query: 157 VPLISQAPSSVRTHNSPQYYSNSLPASQESQ 249
           VP+  Q PSS  ++++  ++  S P S  S+
Sbjct: 401 VPISGQQPSSPASNSNANFFFGSSPQSMSSE 431


>SPAC694.06c |mrc1||mediator of replication checkpoint 1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1019

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +1

Query: 394 IINPATTGPTKSDNIDTESISPSPWAN 474
           +I  + T  +KSDN+D+ES   S  A+
Sbjct: 163 LIQNSATSHSKSDNLDSESADDSDLAD 189


>SPAC6B12.11 |drc1|sld1|DNA replication protein
           Drc1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 337

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 5/69 (7%)
 Frame = +1

Query: 85  QHVGCSLSLSPVPQLSTRFAYP--QHVPLISQAPSSVR--THNSPQYYSNSLPASQE-SQ 249
           +H    +S + +P   ++   P  QH P + + PSS R   + SP     + P  +  S+
Sbjct: 140 KHNTSEISSTMIPTTPSKNPEPVAQHTPTVLETPSSYRLQVYTSPNLLRVNAPCRKSLSE 199

Query: 250 VAQERKFAE 276
           + +E K  E
Sbjct: 200 MLRELKDIE 208


>SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein Trt1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 988

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = -2

Query: 284 FGFSANFRSWATWLSCDAGKELL 216
           FGFS N RS  T L+C    E L
Sbjct: 803 FGFSVNMRSLDTLLACPKIDEAL 825


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,444,060
Number of Sequences: 5004
Number of extensions: 51366
Number of successful extensions: 166
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)