Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_C04
         (549 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_07_0014 - 27046329-27046371,27059170-27060017,27060739-27061563     31   0.46 
05_07_0212 + 28434612-28435931,28436012-28436044,28436557-284366...    30   1.4  
03_05_0629 + 26248960-26249236,26249766-26249894,26250291-262508...    29   2.4  
01_02_0103 + 11153389-11153856                                         28   4.3  
05_04_0050 - 17500090-17500202,17500492-17500574,17501285-175013...    28   5.6  

>05_07_0014 - 27046329-27046371,27059170-27060017,27060739-27061563
          Length = 571

 Score = 31.5 bits (68), Expect = 0.46
 Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
 Frame = +1

Query: 112 SPVPQLSTRFAYPQ-HVPLISQAPSSVRTHNSPQYYSNSLPAS 237
           +P PQ++     PQ H P  + AP+SV +  SPQ   + LPAS
Sbjct: 523 APRPQINRPAPQPQKHAPSGNTAPNSVTSFKSPQGPFSILPAS 565


>05_07_0212 +
           28434612-28435931,28436012-28436044,28436557-28436670,
           28436767-28437102,28437221-28437283,28437364-28437519,
           28437650-28437715,28439074-28439310,28439403-28439678,
           28440060-28440248,28440459-28440620
          Length = 983

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 20/51 (39%), Positives = 28/51 (54%)
 Frame = -2

Query: 545 LSIPSLDAPPPRMPVKILSPIDIKFAHGEGEIDSVSMLSLLVGPVVAGLIM 393
           L+ PS+ APPPR PVK  +  + K   G   ID  +    +V PVVA  ++
Sbjct: 218 LTKPSVVAPPPRRPVKADTSKEKK---GPILIDKFASNKPIVDPVVAAALI 265


>03_05_0629 +
           26248960-26249236,26249766-26249894,26250291-26250847,
           26250933-26251250
          Length = 426

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = -1

Query: 285 VWFFCEFPL-LGYLAFL*RWQGVAVIL 208
           VWFFC  PL L +     +W+G+A IL
Sbjct: 329 VWFFCLLPLILPWTTMKLKWKGLACIL 355


>01_02_0103 + 11153389-11153856
          Length = 155

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 19/59 (32%), Positives = 26/59 (44%)
 Frame = -2

Query: 347 VRDGIRFEFHRDRLVLLSSRAFGFSANFRSWATWLSCDAGKELL*YCGLLCVLTLLGAC 171
           V DG R        V++S+ A   S   RSW+  +S      LL      C+L +LG C
Sbjct: 61  VEDGTRRSAGAGASVVVSTAAAAASELHRSWSATVSGVLPTNLLMTSVERCILAVLGVC 119


>05_04_0050 -
           17500090-17500202,17500492-17500574,17501285-17501319,
           17501403-17501504,17502371-17502443,17504904-17505000,
           17505129-17505282
          Length = 218

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = +2

Query: 125 SSPHALHIPNMFHLYHRHPAVSERITVRNITATPCQRHRKAK 250
           +S  A H        HR PA +  + +  + A PC RH+ AK
Sbjct: 175 NSTLATHAKENIQKQHRLPAAASDLVISPLAAAPC-RHKIAK 215


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,266,762
Number of Sequences: 37544
Number of extensions: 344083
Number of successful extensions: 947
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 921
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 946
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1233951264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)