Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_C03
         (576 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0 |Schizosacch...   226   2e-60
SPBC11G11.03 |||60S acidic ribosomal protein |Schizosaccharomyce...    36   0.003
SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces p...    28   1.1  
SPBP8B7.17c |||phosphomethylpyrimidine kinase|Schizosaccharomyce...    27   2.6  
SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomy...    25   7.9  
SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyce...    25   7.9  

>SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 312

 Score =  226 bits (553), Expect = 2e-60
 Identities = 104/189 (55%), Positives = 138/189 (73%)
 Frame = +1

Query: 10  KAIKDHLETNPALEKLLPHIKGNVGFVFTRGDLVDVRDKLLENKVQAPARPGAIAPLSVV 189
           +A++  +   P LE+LLP ++GNVGFVFT  DL +VR+ ++ N + APARP AIAPL V 
Sbjct: 61  RAMRGIINDMPELERLLPVVRGNVGFVFTNADLKEVRETIIANVIAAPARPNAIAPLDVF 120

Query: 190 IPAHNTGLGPEKTSFFQALSIPTKISKGTIEIINDVHILKPGDKVGASEATLLNMLNISP 369
           +PA NTG+ P KTSFFQAL IPTKI++GTIEI +DVH++    KVG SEATLLNMLNISP
Sbjct: 121 VPAGNTGMEPGKTSFFQALGIPTKITRGTIEITSDVHLVSKDAKVGPSEATLLNMLNISP 180

Query: 370 FSYGLVVKQVYDSGTIFAPAILDIKPEDLREKFLAGVANVAALSLSIGYPTVASAPHSIA 549
           F+YG+ V  +YD G +F+P ILD+  EDL    L+  + + A+SL   YPT+ S  HS+ 
Sbjct: 181 FTYGMDVLTIYDQGNVFSPEILDVSEEDLIGHLLSAASIITAISLGANYPTILSVMHSVV 240

Query: 550 NGFKNLLAI 576
           N +KNL+A+
Sbjct: 241 NAYKNLVAV 249


>SPBC11G11.03 |||60S acidic ribosomal protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 241

 Score = 36.3 bits (80), Expect = 0.003
 Identities = 39/139 (28%), Positives = 61/139 (43%), Gaps = 16/139 (11%)
 Frame = +1

Query: 19  KDHLETNPALEKLLPHIKGNVGFVFTRGDLVDVRDKLLENKVQAP-ARPGAIAPLSVVIP 195
           ++H E    L KLL    G VG +FT     +V     E+ VQ   AR GA+AP + VIP
Sbjct: 83  EEHAENVSKLTKLL---HGAVGLLFTNSKPDEVIG-YFESFVQNDFARAGAVAPFTHVIP 138

Query: 196 A----HNTGLGPEKTSFF---------QALSIPTKISKGTIEIINDVHILKPGDKVGASE 336
           A       G  P +             + L +PT +  G + ++ D  +   G ++ + +
Sbjct: 139 AGPVYSRAGQIPVEDDILLTHTLEPQVRQLGMPTVLKNGVVTLLADFPLCTEGQQLDSRQ 198

Query: 337 ATLLNMLNI--SPFSYGLV 387
             LL +  I  + F  GL+
Sbjct: 199 TRLLKLFGITAAEFKVGLL 217


>SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 728

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = -2

Query: 287 IISIVPFEILVGMERAWKKEVFSGPRPVL*AGMTTDNGAMAP 162
           IIS  P + L+G+  AW  E  S  R  +    T+    +AP
Sbjct: 289 IISFTPAKYLIGIGAAWFSEKLSRERKSISVDKTSKRAILAP 330


>SPBP8B7.17c |||phosphomethylpyrimidine kinase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 506

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = -2

Query: 398 TCLTTRPYEKGEMFNMLRRVASEAP 324
           + LT  PYEKGE  N +R   S  P
Sbjct: 279 SALTRLPYEKGEFINFVRYHPSITP 303


>SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 421

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 13/43 (30%), Positives = 20/43 (46%)
 Frame = -2

Query: 221 SGPRPVL*AGMTTDNGAMAPGRAGAWTLFSNSLSRTSTRSPRV 93
           +G  PV    +  + G++ P  AGAW L  N L    T   ++
Sbjct: 138 NGGVPVYVPIIPPEEGSVKPVSAGAWKLDMNKLRNAITEKTKM 180


>SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 496

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -1

Query: 402 VHLFDNKTIRKGRDVQHVEK 343
           V L D   +RKG DVQ +EK
Sbjct: 289 VLLSDTAGLRKGEDVQEIEK 308


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.317    0.137    0.387 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,449,949
Number of Sequences: 5004
Number of extensions: 50158
Number of successful extensions: 157
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 246098644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)