Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_C01
         (594 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC821.05 |||translation initiation factor eIF3h|Schizosaccharo...    71   1e-13
SPAC1B3.16c |vht1||vitamin H transporter Vth1|Schizosaccharomyce...    27   1.6  
SPAC3C7.09 |set8||lysine methyltransferase Set8 |Schizosaccharom...    27   2.1  
SPCC1795.02c ||SPCC895.01|CaCA proton/calcium exchanger|Schizosa...    27   2.7  
SPBC17G9.03c |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr...    27   2.7  
SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit Srb9...    26   3.6  
SPAC607.09c |btn1||battenin CLN3 family protein|Schizosaccharomy...    25   6.3  
SPAC3H1.09c |||vacuolar amino acid transporter |Schizosaccharomy...    25   6.3  
SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces pombe...    25   8.3  
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom...    25   8.3  

>SPAC821.05 |||translation initiation factor
           eIF3h|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 357

 Score = 71.3 bits (167), Expect = 1e-13
 Identities = 48/152 (31%), Positives = 80/152 (52%), Gaps = 13/152 (8%)
 Frame = +2

Query: 20  TSRRVPDNE-PTITYVQCDGLAVMKIVKHCHEESCSNMEVAQGALLGLVVENRLEITNCF 196
           TS  VP+ E P I  V+ + L VM I+KHC + S  NM    G L+G+ ++  L++++ F
Sbjct: 5   TSLNVPELESPPIERVELESLLVMNIIKHCRD-SFPNMGTI-GQLVGIDIDGVLQVSSSF 62

Query: 197 PFPK----HDDTMDE-------EEYQLDMMRRLRRVNVDHFHVGWYQSADVGNFLSQS-L 340
             P      +  +++       + +   M+ RL+ +     HVGWY  A V +FLS    
Sbjct: 63  ESPSVLENEESAVNKSVSGKARQAHTEAMLNRLQYIGAVTGHVGWYLGAYVSSFLSSPFF 122

Query: 341 LESQYHYQTSIEESVVVIYDTKKSARGFLTLK 436
           +E+QY YQ +   S+  +YD  +S+ G L ++
Sbjct: 123 VETQYAYQKANPNSIAFLYDLSQSSNGTLYMR 154



 Score = 26.6 bits (56), Expect = 2.7
 Identities = 13/49 (26%), Positives = 28/49 (57%)
 Frame = +3

Query: 441 HRLTXQAIAMYKEGDYTPDA*RNLKIGYESLFIEVPIVIRNSPLTNIMI 587
           ++LT + +A ++E  +T  +  +  +   ++  E+PIVI NS L   ++
Sbjct: 156 YQLTPEFMAAHEEKTWTASSLNSHNLTPSNVIRELPIVIHNSHLATCLL 204


>SPAC1B3.16c |vht1||vitamin H transporter Vth1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 568

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
 Frame = -3

Query: 322 VSYICTLVPSNMKMVNIDPAEPSHHVQLVLLFI---HCVIMLRKGEAIGYL 179
           V YI   VPSN+ M  I+P      +QL +  +   H V+  + G A  Y+
Sbjct: 138 VGYIIFEVPSNLMMAFIEPRIWVSRIQLTIGVVGACHAVLGTKHGNAQSYV 188


>SPAC3C7.09 |set8||lysine methyltransferase Set8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 429

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -2

Query: 245 PIGTPLHPLCHHASERGSNWLSLNDSPQL 159
           P+  P+  LC+H+S+  + W    D+ QL
Sbjct: 187 PVLAPVIDLCNHSSKSNAKWSFSEDAMQL 215


>SPCC1795.02c ||SPCC895.01|CaCA proton/calcium
           exchanger|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 412

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 4/43 (9%)
 Frame = +2

Query: 161 VVENRLEITNCFPFPKHD----DTMDEEEYQLDMMRRLRRVNV 277
           + +NRLE  N F FP  D      +   EY   M R+L  +NV
Sbjct: 7   IAKNRLEAMNSFNFPAQDRHERAPLLGSEYDHSMARQLSLLNV 49


>SPBC17G9.03c |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 591

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 14/50 (28%), Positives = 26/50 (52%)
 Frame = +2

Query: 128 MEVAQGALLGLVVENRLEITNCFPFPKHDDTMDEEEYQLDMMRRLRRVNV 277
           M+  +  L GLV +    +T  +  P H +  +  +++LD  R  RR+N+
Sbjct: 355 MDTTEELLSGLVKD----LTGSYKVPYHPEGPEGPKWELDFSRPWRRINM 400


>SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit
           Srb9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1223

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 18/64 (28%), Positives = 29/64 (45%)
 Frame = -3

Query: 424 ESPSRLLSIIDNHHTLLN*GLIVIL*FKQRLTQEVSYICTLVPSNMKMVNIDPAEPSHHV 245
           +SP   LS I+N H  LN      + F + L         L+  N K +++D + P + +
Sbjct: 705 KSPENYLSSINNGHHALNDNPPSQVNFSETLVNFSQPPRVLLKYNEKKLSLDSSAPENWI 764

Query: 244 QLVL 233
            L L
Sbjct: 765 SLCL 768


>SPAC607.09c |btn1||battenin CLN3 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 396

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 11/30 (36%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = -2

Query: 263 GAFASCPIGTPLHP-LCHHASERGSNWLSL 177
           G F +  +   L P LCH  ++RG +W +L
Sbjct: 366 GIFLASLVSLFLEPSLCHFQADRGRDWCAL 395


>SPAC3H1.09c |||vacuolar amino acid transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 656

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +3

Query: 459 AIAMYKEGDYTPDA*RNLKIGYESLFIEVPIVI 557
           AIA+ ++G +T    RN KI +   ++ V IVI
Sbjct: 553 AIAIIEQGIFTRSGKRNRKIKWRKNYLRVLIVI 585


>SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 959

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 6/35 (17%)
 Frame = -3

Query: 316 YIC-TLVPSNMK-----MVNIDPAEPSHHVQLVLL 230
           ++C T VP N+K     M N +PA P H   LV L
Sbjct: 192 FLCLTRVPDNVKSEEVAMANWEPAHPLHKSNLVTL 226


>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1562

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +2

Query: 20  TSRRVPDNEPTITYVQCD 73
           T+R +P N+PT  +  CD
Sbjct: 405 TTRSIPANKPTFFWASCD 422


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,538,980
Number of Sequences: 5004
Number of extensions: 51419
Number of successful extensions: 113
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 258201856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)