Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_C01
         (594 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0650 - 18411588-18411645,18412020-18412172,18412340-184124...   119   2e-27
04_04_1468 + 33811471-33811657,33811888-33811980,33812899-338130...    31   0.92 
02_05_0256 + 27201483-27202499,27203297-27203375,27204617-272049...    29   3.7  
12_01_0940 - 9303549-9303723,9303816-9303893,9304055-9304110,930...    27   8.5  

>04_03_0650 -
           18411588-18411645,18412020-18412172,18412340-18412407,
           18412499-18412600,18412695-18412766,18412843-18412891,
           18412971-18413104,18413488-18413554,18414471-18414574,
           18414677-18414793,18415538-18415647,18415763-18415772
          Length = 347

 Score =  119 bits (287), Expect = 2e-27
 Identities = 64/140 (45%), Positives = 89/140 (63%), Gaps = 5/140 (3%)
 Frame = +2

Query: 32  VPDNEPT-ITYVQCDGLAVMKIVKHCHEESCSNMEVAQGALLGLVVENRLEITNCFPFPK 208
           V +  P+ +  VQ +GLAV+KI+KHC E + +   +  G LLGL V + LE+TNCFPFP 
Sbjct: 24  VTEEAPSPLRVVQMEGLAVLKIIKHCEEFAPA---LVTGQLLGLDVGSVLEVTNCFPFPM 80

Query: 209 HDDT----MDEEEYQLDMMRRLRRVNVDHFHVGWYQSADVGNFLSQSLLESQYHYQTSIE 376
            +D      D   YQL+MMR LR VNVD+  VGWYQS  +G+F +  L+E+  +YQ +I 
Sbjct: 81  REDDEEADADGANYQLEMMRCLREVNVDNNTVGWYQSCLLGSFQTVELIETFMNYQENIR 140

Query: 377 ESVVVIYDTKKSARGFLTLK 436
             V ++YD  +S +G L LK
Sbjct: 141 RCVCIVYDPSRSNQGVLALK 160


>04_04_1468 +
           33811471-33811657,33811888-33811980,33812899-33813027,
           33813089-33813166,33813377-33813435,33813522-33813644,
           33814225-33814282,33814383-33814468,33814564-33814635
          Length = 294

 Score = 30.7 bits (66), Expect = 0.92
 Identities = 17/66 (25%), Positives = 29/66 (43%)
 Frame = +2

Query: 50  TITYVQCDGLAVMKIVKHCHEESCSNMEVAQGALLGLVVENRLEITNCFPFPKHDDTMDE 229
           T+  V    L ++ IV H +  +    +   G LLG      +++TN +  P  +D  D 
Sbjct: 13  TLEKVVVHPLVLLSIVDHYNRVARDTRKRVVGVLLGTSSRGSVDVTNSYAVPFEEDDKDP 72

Query: 230 EEYQLD 247
             + LD
Sbjct: 73  RIWFLD 78


>02_05_0256 +
           27201483-27202499,27203297-27203375,27204617-27204946,
           27205029-27205198
          Length = 531

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = +3

Query: 345 NHSITIKPQLRRVWWLSMILR 407
           +H IT KP   R+WW++ ++R
Sbjct: 246 HHIITTKPSSLRIWWVADLMR 266


>12_01_0940 -
           9303549-9303723,9303816-9303893,9304055-9304110,
           9304687-9304760,9304888-9304892,9304934-9304971,
           9308558-9308578,9308764-9308858,9309989-9310115
          Length = 222

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 18/52 (34%), Positives = 22/52 (42%)
 Frame = +2

Query: 296 WYQSADVGNFLSQSLLESQYHYQTSIEESVVVIYDTKKSARGFLTLKPAPSD 451
           WY+     N L     ES +    SI E  V  YD   S   F++  PAP D
Sbjct: 104 WYELQIKKNKLCDMFDESSFGTTPSIPEMPVHRYDRDLSKNNFMS-SPAPGD 154


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,884,364
Number of Sequences: 37544
Number of extensions: 359902
Number of successful extensions: 775
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 764
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 773
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1411925004
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)