Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_C01
         (594 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003740-3|AAC48137.2|  365|Caenorhabditis elegans Eukaryotic in...    95   3e-20
Z47808-5|CAA87773.1|  294|Caenorhabditis elegans Hypothetical pr...    42   4e-04
AF067621-1|AAC17540.2| 4368|Caenorhabditis elegans Hypothetical ...    28   4.4  

>AF003740-3|AAC48137.2|  365|Caenorhabditis elegans Eukaryotic
           initiation factor protein3.H protein.
          Length = 365

 Score = 95.1 bits (226), Expect = 3e-20
 Identities = 59/157 (37%), Positives = 89/157 (56%), Gaps = 19/157 (12%)
 Frame = +2

Query: 23  SRRVPDNEPTITYVQCDGLAVMKIVKHCHEESCSNM-----EVAQGALLGLVV--ENRLE 181
           S  V    P++ ++  D L VMKIVKH   E  + +     +   G L GLV   ++RLE
Sbjct: 2   STAVTITAPSVKHILLDSLVVMKIVKHVDSELHAGISEVSGDACAGVLTGLVFLEDSRLE 61

Query: 182 ITNCFPFPKHDDTMDEE-----EYQ-------LDMMRRLRRVNVDHFHVGWYQSADVGNF 325
           ITNCFP  +++  MD++     +Y+       LDM+R+ R +N+D+  VG+YQS   G  
Sbjct: 62  ITNCFPTVRNEPVMDDDANAAQQYEEQKQHEMLDMLRKFRTMNIDYEIVGFYQSHQFGAG 121

Query: 326 LSQSLLESQYHYQTSIEESVVVIYDTKKSARGFLTLK 436
            S  L+ES + YQ    E+VV+IYD  K+ +G L+L+
Sbjct: 122 FSHDLVESMFDYQAMGPENVVLIYDPIKTRQGQLSLR 158


>Z47808-5|CAA87773.1|  294|Caenorhabditis elegans Hypothetical
           protein D2013.7 protein.
          Length = 294

 Score = 41.5 bits (93), Expect = 4e-04
 Identities = 21/90 (23%), Positives = 43/90 (47%), Gaps = 3/90 (3%)
 Frame = +2

Query: 122 SNMEVAQGALLGLVVENRLEITNCFPFP---KHDDTMDEEEYQLDMMRRLRRVNVDHFHV 292
           +  E   G L+G   +  +++TNCF  P    +DD   ++++   M+  L++ + +   V
Sbjct: 32  TGQEKCMGTLMGYYEKGSIQVTNCFAIPFNESNDDLEIDDQFNQQMISALKKTSPNEQPV 91

Query: 293 GWYQSADVGNFLSQSLLESQYHYQTSIEES 382
           GW+ +    +  S  L+   Y+ +   E S
Sbjct: 92  GWFLT--TSDITSSCLIYHDYYVRVITEAS 119


>AF067621-1|AAC17540.2| 4368|Caenorhabditis elegans Hypothetical
            protein F55F10.1 protein.
          Length = 4368

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 9/55 (16%)
 Frame = +2

Query: 65   QCDGLAVMKIVKHCHEESCS------NME-VAQ--GALLGLVVENRLEITNCFPF 202
            QCD  AV+K +K   EE CS      N+E +A+  G    +V ++ +++TNC  F
Sbjct: 3521 QCDIQAVVKSLKSIVEEHCSGEKRRKNLEGLAELAGITADIVEQSVIQLTNCLGF 3575


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,153,763
Number of Sequences: 27780
Number of extensions: 299043
Number of successful extensions: 657
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 627
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 654
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1258229602
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)