Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_B24
         (382 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC25D12.03c |mcm7||MCM complex subunit Mcm7|Schizosaccharomyce...   109   1e-25
SPBC211.04c |mcm6|mis5|MCM complex subunit Mcm6 |Schizosaccharom...    54   8e-09
SPAC1B2.05 |mcm5|nda4, SPAC3F10.01|MCM complex subunit Mcm5|Schi...    42   2e-05
SPBC4.04c |mcm2|cdc19, nda1|MCM complex subunit Mcm2 |Schizosacc...    42   4e-05
SPCC16A11.17 |cdc21|mcm4, SPCC24B10.01|MCM complex subunit Cdc21...    39   2e-04
SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces...    38   4e-04
SPAC12G12.16c ||SPAC18B11.01c|nuclease, XP-G family|Schizosaccha...    30   0.11 
SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin Nup132|Schizosa...    25   4.0  
SPAC23H3.14 |||LAlv9 family protein|Schizosaccharomyces pombe|ch...    25   4.0  
SPCC1672.10 |mis16||kinetochore protein Mis16 |Schizosaccharomyc...    24   7.0  
SPAC23C11.03 |||U3 snoRNP-associated protein Mpp1 |Schizosacchar...    24   9.3  

>SPBC25D12.03c |mcm7||MCM complex subunit Mcm7|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 760

 Score =  109 bits (263), Expect = 1e-25
 Identities = 56/124 (45%), Positives = 72/124 (58%), Gaps = 1/124 (0%)
 Frame = +3

Query: 12  TRGSRFQKFQELKIQEHSDQVPVGHIPRQLSVYCRGETTRRAQPGDHVAVVGIFLPLLNA 191
           TR S+F  FQE+KIQE ++QVP+GHIPR L+V+  G  TR   PGD V + GIFLP    
Sbjct: 245 TRASKFLPFQEVKIQELTNQVPIGHIPRSLTVHLYGAITRSVNPGDIVDISGIFLPTPYT 304

Query: 192 GFRQIVQGLLSDTYLEAHGVT-CLNQSDXXXXXXXXXXXXXXXXXXXXXYSRMARSLAPE 368
           GFR +  GLL+DTYLE H V+  +                         Y ++A+S+APE
Sbjct: 305 GFRAMRAGLLTDTYLECHYVSQIIKNYTNIEKTPQSEAAIAELNQGGNVYEKLAKSIAPE 364

Query: 369 IYGH 380
           IYGH
Sbjct: 365 IYGH 368


>SPBC211.04c |mcm6|mis5|MCM complex subunit Mcm6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 892

 Score = 54.0 bits (124), Expect = 8e-09
 Identities = 23/52 (44%), Positives = 35/52 (67%)
 Frame = +3

Query: 21  SRFQKFQELKIQEHSDQVPVGHIPRQLSVYCRGETTRRAQPGDHVAVVGIFL 176
           S FQ +Q+++IQE+S+++P G +PR L V  RG+   RA+ GD  A  GI +
Sbjct: 273 SSFQDWQKVRIQENSNEIPTGSMPRTLDVILRGDIVERAKAGDKCAFTGILI 324



 Score = 28.7 bits (61), Expect = 0.33
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = +3

Query: 336 YSRMARSLAPEIYGH 380
           YSR+  SLAP +YGH
Sbjct: 427 YSRLTNSLAPSVYGH 441


>SPAC1B2.05 |mcm5|nda4, SPAC3F10.01|MCM complex subunit
           Mcm5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 720

 Score = 42.3 bits (95), Expect = 2e-05
 Identities = 30/124 (24%), Positives = 49/124 (39%), Gaps = 4/124 (3%)
 Frame = +3

Query: 21  SRFQKFQELKIQEHSDQVPVGHIPRQLSVYCRGETTRRAQPGDHVAVVGIFLPLLNAGFR 200
           S F   Q LK+QE  D VPVG +PR + +      T +  PG    + GIF    N   +
Sbjct: 215 STFIDQQVLKLQEAPDMVPVGELPRHILLNADRYLTNQITPGTRCVITGIFSIFQNKSVK 274

Query: 201 QIVQGLLSDTYLEAHGVTCLNQSDXXXX----XXXXXXXXXXXXXXXXXYSRMARSLAPE 368
                 + + Y+   G+  ++ +D                         Y  ++ S++P 
Sbjct: 275 ASGAVAIRNPYIRVVGIQ-MDSNDGSKSTPLFSEEEEEEFLEISRTPNLYDIISNSISPA 333

Query: 369 IYGH 380
           IYG+
Sbjct: 334 IYGN 337


>SPBC4.04c |mcm2|cdc19, nda1|MCM complex subunit Mcm2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 830

 Score = 41.5 bits (93), Expect = 4e-05
 Identities = 29/125 (23%), Positives = 50/125 (40%), Gaps = 7/125 (5%)
 Frame = +3

Query: 27  FQKFQELKIQEHSDQVPVGHIPRQLSVYCRGETTRRAQPGDHVAVVGIFLPLLNAGFRQI 206
           +  +Q + +QE    VP G +PR   V    +    A+PG+ + V GI+    +A     
Sbjct: 375 YNNYQRITLQESPGTVPSGRLPRHREVILLADLVDVAKPGEEIDVTGIYRNNFDASLNTK 434

Query: 207 VQGLLSDTYLEAHGVTCLNQSDXXXXXXXXXXXXX-------XXXXXXXXYSRMARSLAP 365
               +  T +EA+ ++ L+ S                             ++R+  S+AP
Sbjct: 435 NGFPVFATIIEANHISQLDGSGNTDDDFSLSRLTDDEEREIRALAKSPDIHNRIIASMAP 494

Query: 366 EIYGH 380
            IYGH
Sbjct: 495 SIYGH 499


>SPCC16A11.17 |cdc21|mcm4, SPCC24B10.01|MCM complex subunit
           Cdc21|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 911

 Score = 39.1 bits (87), Expect = 2e-04
 Identities = 20/51 (39%), Positives = 26/51 (50%)
 Frame = +3

Query: 21  SRFQKFQELKIQEHSDQVPVGHIPRQLSVYCRGETTRRAQPGDHVAVVGIF 173
           S F   Q +K+QE  D VP G  P  +S+    E    A+ GD + V GIF
Sbjct: 366 SEFADKQVIKLQETPDVVPDGQTPHSVSLCVYDELVDSARAGDRIEVTGIF 416


>SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 879

 Score = 38.3 bits (85), Expect = 4e-04
 Identities = 15/49 (30%), Positives = 26/49 (53%)
 Frame = +3

Query: 21  SRFQKFQELKIQEHSDQVPVGHIPRQLSVYCRGETTRRAQPGDHVAVVG 167
           S F+  Q + +QE  ++ P G +PR + +    +     +PGD V +VG
Sbjct: 196 STFRDHQSISLQEMPERAPPGQLPRSIDILLDDDLVDTVKPGDRVNIVG 244


>SPAC12G12.16c ||SPAC18B11.01c|nuclease, XP-G
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 496

 Score = 30.3 bits (65), Expect = 0.11
 Identities = 23/64 (35%), Positives = 36/64 (56%), Gaps = 2/64 (3%)
 Frame = -3

Query: 347 HSRIQVL-LSQLCEFLFR*R-FGHFIFIALI*TCNTMCLKVCIGEQTLDDLPEAGVEQRQ 174
           HS  Q+L  S++ +F    R +  FI   L   C T+CLK+  G  TLD+L +A ++ +Q
Sbjct: 202 HSLRQLLAFSEINDFPSEIRSYLEFILSNLDLECLTLCLKIIKGILTLDELQKA-IKLKQ 260

Query: 173 EDAD 162
            + D
Sbjct: 261 TELD 264


>SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin
           Nup132|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1162

 Score = 25.0 bits (52), Expect = 4.0
 Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
 Frame = +3

Query: 30  QKFQELKIQEHSDQVPVGHIPRQLSVYCRG-ETTRRAQPGDH 152
           QK  +L I    ++VP    P  L + CR  E TR A    H
Sbjct: 659 QKIYKLSIDTFGEEVPWTSTPETLVLLCRQFELTRSALVQSH 700


>SPAC23H3.14 |||LAlv9 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 469

 Score = 25.0 bits (52), Expect = 4.0
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = -3

Query: 164 DDGDVVPGLSAPRRLPATVHRQLPGDVT 81
           D+G V  GLS  R+L A+  + +P DVT
Sbjct: 69  DEGTVF-GLSCTRQLNASSLKNIPSDVT 95


>SPCC1672.10 |mis16||kinetochore protein Mis16 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 430

 Score = 24.2 bits (50), Expect = 7.0
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -3

Query: 206 DLPEAGVEQRQEDADDG 156
           DL + G EQ  EDA+DG
Sbjct: 354 DLEKIGEEQTPEDAEDG 370


>SPAC23C11.03 |||U3 snoRNP-associated protein Mpp1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 598

 Score = 23.8 bits (49), Expect = 9.3
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -3

Query: 212 LDDLPEAGVEQRQEDAD 162
           LDDLP+  VE   E+ D
Sbjct: 67  LDDLPQVDVENEDEEED 83


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,310,498
Number of Sequences: 5004
Number of extensions: 19882
Number of successful extensions: 79
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 124270298
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)