Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0007_B24
(382 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0768 - 22988119-22988223,22988337-22988558,22988645-229888... 111 2e-25
05_05_0208 + 23275931-23275996,23276084-23276196,23276279-232764... 46 1e-05
05_03_0079 + 8212648-8212724,8212844-8212993,8213211-8213351,821... 44 4e-05
01_05_0265 + 20188160-20188211,20188291-20189019,20189103-201892... 41 4e-04
02_05_1080 - 33955034-33955117,33955199-33955300,33955381-339555... 40 9e-04
11_04_0331 + 16456577-16456579,16456664-16456911,16457625-164578... 39 0.001
06_01_0809 - 6100025-6100251,6100456-6100565,6100919-6100986,610... 35 0.025
12_02_0937 - 24568475-24569145,24569215-24569319,24569419-245699... 28 2.2
08_02_1122 + 24468086-24468276,24468726-24468976,24469092-244691... 27 5.0
05_07_0367 - 29700855-29700920,29701092-29701149,29701446-297015... 27 6.6
02_02_0017 - 6131265-6131284,6131654-6131774,6132011-6132146,613... 27 6.6
02_02_0016 - 6118739-6118758,6119116-6119236,6119478-6119613,611... 27 6.6
11_06_0695 - 26340161-26340804,26342057-26343429,26344074-263441... 26 8.7
10_07_0138 + 13325418-13325954 26 8.7
>12_02_0768 -
22988119-22988223,22988337-22988558,22988645-22988810,
22989176-22989181,22989281-22989453,22989737-22989928,
22990034-22990211,22990302-22990444,22990666-22990755,
22990869-22990991,22991391-22991568,22992213-22992442,
22992557-22992616,22992731-22992798,22992908-22992953
Length = 659
Score = 111 bits (267), Expect = 2e-25
Identities = 56/125 (44%), Positives = 77/125 (61%), Gaps = 1/125 (0%)
Frame = +3
Query: 9 QTRGSRFQKFQELKIQEHSDQVPVGHIPRQLSVYCRGETTRRAQPGDHVAVVGIFLPLLN 188
Q R S+F KFQE+K+QE ++ VP GHIPR L+V+ RGE TR+ PGD V + GIFLP+
Sbjct: 224 QLRASKFLKFQEVKLQELAEHVPKGHIPRSLTVHLRGELTRKVAPGDVVEMSGIFLPMPY 283
Query: 189 AGFRQIVQGLLSDTYLEAHGVTCLNQS-DXXXXXXXXXXXXXXXXXXXXXYSRMARSLAP 365
GFR + GL++DTYLE+ +T + + Y+++ARSLAP
Sbjct: 284 YGFRAMRAGLVADTYLESMSITHFKKKYEEYELKGDEQEQIDRLAEDGDIYNKLARSLAP 343
Query: 366 EIYGH 380
EI+GH
Sbjct: 344 EIFGH 348
>05_05_0208 +
23275931-23275996,23276084-23276196,23276279-23276459,
23276590-23276674,23276974-23277104,23277194-23277432,
23277512-23277748,23277838-23277992,23278039-23278271,
23278359-23278521,23278613-23278818,23278960-23279019,
23279106-23279198,23279406-23279569,23280070-23280138,
23280241-23280382,23280490-23280546
Length = 797
Score = 45.6 bits (103), Expect = 1e-05
Identities = 29/119 (24%), Positives = 52/119 (43%), Gaps = 1/119 (0%)
Frame = +3
Query: 27 FQKFQELKIQEHSDQVPVGHIPRQLSVYCRGETTRRAQPGDHVAVVGIFLPLLNAGFRQI 206
++ Q L +QE + G +PR + + + +PGD V++VG++ L +
Sbjct: 208 YKDHQTLSMQEVPENSAPGQLPRTVDIIVEDDLVDSCKPGDRVSIVGVYKALPGKS-KGS 266
Query: 207 VQGLLSDTYLEAHGVTCLN-QSDXXXXXXXXXXXXXXXXXXXXXYSRMARSLAPEIYGH 380
V G+ T L A+ V+ +N +++ + + SLAP IYGH
Sbjct: 267 VSGVFR-TVLIANNVSLMNKEANAPVYTREDLKRMKEISRRNDTFDLLGNSLAPSIYGH 324
>05_03_0079 +
8212648-8212724,8212844-8212993,8213211-8213351,
8213658-8213820,8213901-8214094,8214174-8214369,
8214462-8214539,8214933-8215162,8215574-8215688,
8215878-8215952,8216032-8216172,8216309-8216512,
8216586-8216747,8216787-8216794,8217099-8217223,
8217316-8217438,8218177-8218307,8218527-8218658
Length = 814
Score = 44.0 bits (99), Expect = 4e-05
Identities = 19/49 (38%), Positives = 29/49 (59%)
Frame = +3
Query: 21 SRFQKFQELKIQEHSDQVPVGHIPRQLSVYCRGETTRRAQPGDHVAVVG 167
S+F +Q +++QE S ++P G +PR L V R E +A+ GD V G
Sbjct: 199 SKFTDWQRVRMQETSKEIPAGSLPRSLDVILRHEIVEKARAGDTVIFTG 247
>01_05_0265 +
20188160-20188211,20188291-20189019,20189103-20189231,
20189857-20189938,20190034-20190166,20190269-20190340,
20190478-20190573,20190651-20190764,20190838-20191050,
20191144-20191242,20191328-20191488,20191589-20191685,
20191828-20191989,20192068-20192148,20192242-20192320,
20192414-20192550,20192638-20192688,20192776-20192844,
20193583-20193700,20194142-20194197
Length = 909
Score = 40.7 bits (91), Expect = 4e-04
Identities = 18/50 (36%), Positives = 27/50 (54%)
Frame = +3
Query: 24 RFQKFQELKIQEHSDQVPVGHIPRQLSVYCRGETTRRAQPGDHVAVVGIF 173
RF Q +K+QE D++P G P +SV + +PGD V + GI+
Sbjct: 331 RFADKQIIKLQETPDEIPEGGTPHTVSVLMHDKLVDAGKPGDRVEITGIY 380
>02_05_1080 -
33955034-33955117,33955199-33955300,33955381-33955510,
33955674-33955783,33955827-33955950,33956042-33956136,
33956205-33956300,33956419-33956551,33956668-33956759,
33956844-33956948,33957201-33957335,33957421-33957526,
33957621-33957748,33957860-33957958,33958049-33958228,
33958303-33958446,33958533-33958647,33958739-33958905
Length = 714
Score = 39.5 bits (88), Expect = 9e-04
Identities = 27/123 (21%), Positives = 47/123 (38%), Gaps = 3/123 (2%)
Frame = +3
Query: 21 SRFQKFQELKIQEHSDQVPVGHIPRQLSVYCRGETTRRAQPGDHVAVVGIFLPLLNAGFR 200
S++ Q LK+QE+ + VP G +PR + + + PG + V+GI+ + A
Sbjct: 220 SKYVDLQTLKLQENPEDVPTGELPRNMLLSVDRHLVQTIVPGTRLTVIGIY-SVYQASAN 278
Query: 201 QIVQGLLSDTYLEAHGV---TCLNQSDXXXXXXXXXXXXXXXXXXXXXYSRMARSLAPEI 371
Q + Y+ G+ N + Y ++ + P I
Sbjct: 279 QKGAVGVKQPYIRVVGLEQSRDANSNGPSNFTLDEEMEFKEFAQRPDAYVKICSMIGPSI 338
Query: 372 YGH 380
YGH
Sbjct: 339 YGH 341
>11_04_0331 +
16456577-16456579,16456664-16456911,16457625-16457812,
16458293-16458489,16458579-16458768,16458865-16459084,
16459169-16459376,16459508-16459642,16459725-16459916,
16459999-16460171,16460266-16460454,16460539-16460655,
16460734-16460818,16460900-16461052,16461135-16461260,
16461391-16461573,16461823-16461984,16462098-16462214
Length = 961
Score = 39.1 bits (87), Expect = 0.001
Identities = 28/119 (23%), Positives = 46/119 (38%), Gaps = 1/119 (0%)
Frame = +3
Query: 27 FQKFQELKIQEHSDQVPVGHIPRQLSVYCRGETTRRAQPGDHVAVVGIFLPLLNAGFRQI 206
++ +Q+L +QE VP G +PR V + A+PG+ + V GI+ +
Sbjct: 421 YRNYQKLTLQESPGIVPAGRLPRYKEVILLNDLIDCARPGEEIEVTGIYTNNFDLSLNTK 480
Query: 207 VQGLLSDTYLEAHGVTCLNQ-SDXXXXXXXXXXXXXXXXXXXXXYSRMARSLAPEIYGH 380
+ T +EA+ V R+ +S+AP IYGH
Sbjct: 481 NGFPVFATVVEANYVAKKQDLFSAYKLTDEDKAEIEKLAKDPRIGERIVKSIAPSIYGH 539
>06_01_0809 -
6100025-6100251,6100456-6100565,6100919-6100986,
6101108-6101229,6101446-6101527,6101629-6101695,
6102811-6102883,6103032-6103148,6104167-6104259,
6104430-6104495,6105121-6105218,6105917-6106016,
6106486-6106660,6106828-6106894,6107574-6107712,
6107830-6107926,6107992-6108130,6108212-6108363
Length = 663
Score = 34.7 bits (76), Expect = 0.025
Identities = 16/44 (36%), Positives = 24/44 (54%)
Frame = +3
Query: 36 FQELKIQEHSDQVPVGHIPRQLSVYCRGETTRRAQPGDHVAVVG 167
+QE+KIQE+ + VG IPR + + + + GD V V G
Sbjct: 220 YQEIKIQENIQLLGVGSIPRSMPIILMDDLVDIVKAGDDVVVTG 263
>12_02_0937 -
24568475-24569145,24569215-24569319,24569419-24569991,
24570480-24570780,24570867-24572039,24572260-24572328
Length = 963
Score = 28.3 bits (60), Expect = 2.2
Identities = 13/42 (30%), Positives = 19/42 (45%)
Frame = +3
Query: 6 GQTRGSRFQKFQELKIQEHSDQVPVGHIPRQLSVYCRGETTR 131
G + GSR + LK H+D P G++P GE +
Sbjct: 4 GSSEGSRDMRTGYLKTTAHNDAEPTGNLPEDAQSTNNGEAKK 45
>08_02_1122 +
24468086-24468276,24468726-24468976,24469092-24469182,
24469381-24469429,24469527-24469618,24469714-24469821,
24469912-24470046,24470153-24470563,24470664-24470805,
24470893-24470960,24471072-24471206,24471314-24471531,
24471634-24472004
Length = 753
Score = 27.1 bits (57), Expect = 5.0
Identities = 17/39 (43%), Positives = 21/39 (53%)
Frame = +3
Query: 156 AVVGIFLPLLNAGFRQIVQGLLSDTYLEAHGVTCLNQSD 272
AV +FLP+L FR ++QG SD LE CL D
Sbjct: 116 AVYTVFLPILEGPFRAVLQG-NSDDELE----ICLESGD 149
>05_07_0367 -
29700855-29700920,29701092-29701149,29701446-29701503,
29701800-29701857,29702154-29702211,29702508-29702551,
29702840-29703022,29703192-29703249,29703545-29703602,
29703897-29703954,29704250-29704307,29704956-29705013,
29705310-29705367,29705664-29705721,29706348-29706398,
29706695-29706752,29707049-29707106,29707403-29707459,
29707754-29707810,29708085-29708135,29708431-29708507,
29708785-29708842,29709139-29709195,29709490-29709546,
29709821-29709893,29710167-29710224,29710521-29710578,
29710875-29710931,29711558-29711608,29711904-29711980,
29712258-29712315,29712612-29712669,29712966-29713016,
29713667-29713717,29714014-29714057,29714368-29714444,
29714722-29714779,29715076-29715126,29715423-29715480,
29715776-29715833,29716130-29716187,29716484-29716534,
29716831-29716907,29717185-29717242,29717539-29717589,
29718240-29718316,29718594-29718651,29718947-29719004,
29719301-29719351,29719648-29719705,29723277-29723334,
29723631-29723681,29724331-29724388,29724684-29724741,
29725038-29725088,29725385-29725442,29725738-29725814,
29726092-29726148,29726444-29726501,29726798-29726848,
29727070-29727075
Length = 1209
Score = 26.6 bits (56), Expect = 6.6
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = +1
Query: 316 SWLRRTCIREWPAVWPLKYT 375
S RRT WP +W L+Y+
Sbjct: 631 STFRRTTAASWPMLWTLRYS 650
Score = 26.6 bits (56), Expect = 6.6
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = +1
Query: 316 SWLRRTCIREWPAVWPLKYT 375
S RRT WP +W L+Y+
Sbjct: 713 STFRRTTAASWPMLWTLRYS 732
Score = 26.6 bits (56), Expect = 6.6
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = +1
Query: 316 SWLRRTCIREWPAVWPLKYT 375
S RRT WP +W L+Y+
Sbjct: 732 STFRRTTAASWPMLWTLRYS 751
Score = 26.6 bits (56), Expect = 6.6
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = +1
Query: 316 SWLRRTCIREWPAVWPLKYT 375
S RRT WP +W L+Y+
Sbjct: 813 STFRRTTAASWPMLWTLRYS 832
Score = 26.6 bits (56), Expect = 6.6
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = +1
Query: 316 SWLRRTCIREWPAVWPLKYT 375
S RRT WP +W L+Y+
Sbjct: 832 STFRRTTAASWPMLWTLRYS 851
>02_02_0017 -
6131265-6131284,6131654-6131774,6132011-6132146,
6132423-6132529,6133006-6133099,6133199-6133395,
6134401-6134472,6135128-6135304,6135393-6135467,
6135557-6135697,6136439-6136627,6136969-6137034,
6137118-6137268,6137596-6137664,6138751-6138899,
6138969-6139100,6139198-6139523,6139599-6139635,
6139765-6139803,6140196-6140250,6140363-6140424,
6140512-6140532,6140820-6140822
Length = 812
Score = 26.6 bits (56), Expect = 6.6
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = -3
Query: 224 GEQTLDDLPEAGVEQRQEDADDGDV 150
G+ T + + E GVE+ QEDA + DV
Sbjct: 761 GDDTHEAIEENGVEESQEDAVEVDV 785
>02_02_0016 -
6118739-6118758,6119116-6119236,6119478-6119613,
6119887-6119993,6120316-6120409,6120509-6120705,
6121872-6121943,6122597-6122773,6122862-6122936,
6123027-6123167,6123837-6124025,6124415-6124480,
6124564-6124714,6125040-6125200,6126279-6126410,
6126508-6126833,6126906-6126942,6127056-6127088,
6127500-6127554,6127666-6127753,6127817-6127862
Length = 807
Score = 26.6 bits (56), Expect = 6.6
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = -3
Query: 224 GEQTLDDLPEAGVEQRQEDADDGDV 150
G+ T + + E GVE+ QEDA + DV
Sbjct: 756 GDDTHEAIEENGVEESQEDAVEVDV 780
>11_06_0695 -
26340161-26340804,26342057-26343429,26344074-26344173,
26345230-26345362,26346857-26347258
Length = 883
Score = 26.2 bits (55), Expect = 8.7
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = -3
Query: 170 DADDGDVVPGLSAPRRLPATVHRQLPGDVTH 78
D DG V + RR+P HR + G++TH
Sbjct: 842 DVCDGLSVADRNGVRRIPVGEHRLIIGELTH 872
>10_07_0138 + 13325418-13325954
Length = 178
Score = 26.2 bits (55), Expect = 8.7
Identities = 8/16 (50%), Positives = 10/16 (62%)
Frame = +1
Query: 313 QSWLRRTCIREWPAVW 360
+SW RR C R W +W
Sbjct: 107 RSWRRRRCSRRWRRLW 122
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,398,283
Number of Sequences: 37544
Number of extensions: 156880
Number of successful extensions: 589
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 535
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 587
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 624784784
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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