Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_B24
         (382 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016427-3|AAB65356.1|  730|Caenorhabditis elegans Yeast mcm (li...   110   4e-25
Z29095-13|CAA82357.1|  810|Caenorhabditis elegans Hypothetical p...    48   2e-06
Z22181-15|CAA80191.1|  810|Caenorhabditis elegans Hypothetical p...    48   2e-06
AF326940-1|AAG49390.1|  810|Caenorhabditis elegans replication l...    48   2e-06
AC025716-11|AAK39605.1|  823|Caenorhabditis elegans Yeast mcm (l...    48   2e-06
Z50874-6|CAA90765.1|  759|Caenorhabditis elegans Hypothetical pr...    47   4e-06
AL023828-7|CAA19452.1|  881|Caenorhabditis elegans Hypothetical ...    46   9e-06
Z81039-5|CAB02770.1|  812|Caenorhabditis elegans Hypothetical pr...    43   6e-05
Z82053-9|CAJ85768.1|  189|Caenorhabditis elegans Hypothetical pr...    27   4.5  
Z82053-8|CAB61018.2|  309|Caenorhabditis elegans Hypothetical pr...    27   4.5  
AF070968-1|AAD15926.1|  309|Caenorhabditis elegans PAR-6 protein.      27   4.5  
Z81476-2|CAB03918.1| 1469|Caenorhabditis elegans Hypothetical pr...    26   7.9  
AF067621-1|AAC17540.2| 4368|Caenorhabditis elegans Hypothetical ...    26   7.9  

>AF016427-3|AAB65356.1|  730|Caenorhabditis elegans Yeast mcm
           (licensing factor) relatedprotein 7 protein.
          Length = 730

 Score =  110 bits (264), Expect = 4e-25
 Identities = 58/124 (46%), Positives = 75/124 (60%)
 Frame = +3

Query: 9   QTRGSRFQKFQELKIQEHSDQVPVGHIPRQLSVYCRGETTRRAQPGDHVAVVGIFLPLLN 188
           Q RGS+F KFQELKIQE S+QVPVG IPR ++V+  GE TR+   G+ V V G+FLP++ 
Sbjct: 236 QLRGSKFVKFQELKIQELSEQVPVGSIPRTMTVHVYGEMTRKCNTGNVVHVSGVFLPIMQ 295

Query: 189 AGFRQIVQGLLSDTYLEAHGVTCLNQSDXXXXXXXXXXXXXXXXXXXXXYSRMARSLAPE 368
           +GFR    GL++DTYLEAH +   N  D                     Y  +A S+APE
Sbjct: 296 SGFRP-TGGLVADTYLEAHYIN--NLDDNPTFNGVQSAELEVLRRKGDNYETLAASIAPE 352

Query: 369 IYGH 380
           I+GH
Sbjct: 353 IFGH 356


>Z29095-13|CAA82357.1|  810|Caenorhabditis elegans Hypothetical
           protein ZK632.1a protein.
          Length = 810

 Score = 48.4 bits (110), Expect = 2e-06
 Identities = 22/52 (42%), Positives = 30/52 (57%)
 Frame = +3

Query: 21  SRFQKFQELKIQEHSDQVPVGHIPRQLSVYCRGETTRRAQPGDHVAVVGIFL 176
           S F  FQ+++IQE   ++P G IPR + V  RGE     QPGD   +VG  +
Sbjct: 197 STFVDFQKIRIQETQAELPRGSIPRTVDVIVRGEMVETVQPGDKCDIVGTLI 248


>Z22181-15|CAA80191.1|  810|Caenorhabditis elegans Hypothetical
           protein ZK632.1a protein.
          Length = 810

 Score = 48.4 bits (110), Expect = 2e-06
 Identities = 22/52 (42%), Positives = 30/52 (57%)
 Frame = +3

Query: 21  SRFQKFQELKIQEHSDQVPVGHIPRQLSVYCRGETTRRAQPGDHVAVVGIFL 176
           S F  FQ+++IQE   ++P G IPR + V  RGE     QPGD   +VG  +
Sbjct: 197 STFVDFQKIRIQETQAELPRGSIPRTVDVIVRGEMVETVQPGDKCDIVGTLI 248


>AF326940-1|AAG49390.1|  810|Caenorhabditis elegans replication
           licensing factor MCM2/3/5-type protein protein.
          Length = 810

 Score = 48.4 bits (110), Expect = 2e-06
 Identities = 22/52 (42%), Positives = 30/52 (57%)
 Frame = +3

Query: 21  SRFQKFQELKIQEHSDQVPVGHIPRQLSVYCRGETTRRAQPGDHVAVVGIFL 176
           S F  FQ+++IQE   ++P G IPR + V  RGE     QPGD   +VG  +
Sbjct: 197 STFVDFQKIRIQETQAELPRGSIPRTVDVIVRGEMVETVQPGDKCDIVGTLI 248


>AC025716-11|AAK39605.1|  823|Caenorhabditis elegans Yeast mcm
           (licensing factor) relatedprotein 4 protein.
          Length = 823

 Score = 48.4 bits (110), Expect = 2e-06
 Identities = 22/51 (43%), Positives = 27/51 (52%)
 Frame = +3

Query: 21  SRFQKFQELKIQEHSDQVPVGHIPRQLSVYCRGETTRRAQPGDHVAVVGIF 173
           S F   Q +K+QE  D +P G  P  +SVY  G      QPGD + V GIF
Sbjct: 307 SVFLDKQVVKLQESPDDMPSGETPHTVSVYAHGSLVESVQPGDRITVTGIF 357


>Z50874-6|CAA90765.1|  759|Caenorhabditis elegans Hypothetical
           protein R10E4.4 protein.
          Length = 759

 Score = 47.2 bits (107), Expect = 4e-06
 Identities = 31/121 (25%), Positives = 56/121 (46%), Gaps = 7/121 (5%)
 Frame = +3

Query: 36  FQELKIQEHSDQVPVGHIPRQLSVYCRGETTRRAQPGDHVAVVGIFLP---LLNAGFRQI 206
           +Q LK+QE+ + VP G +PR L ++     T +  PG+ V +VG++     +   G  + 
Sbjct: 225 YQTLKLQENPEDVPHGEMPRHLQLFTERYLTDKVVPGNRVTIVGVYSIKKLIQKKGGDKS 284

Query: 207 VQGLLSDTYLEAHGV----TCLNQSDXXXXXXXXXXXXXXXXXXXXXYSRMARSLAPEIY 374
           +QG+ +  YL   G+    +   +++                     Y  +A+S+AP IY
Sbjct: 285 LQGIRTP-YLRVLGIHMETSGPGRTNFTTFTPEEERMFKTLAQRKDAYELIAKSIAPSIY 343

Query: 375 G 377
           G
Sbjct: 344 G 344


>AL023828-7|CAA19452.1|  881|Caenorhabditis elegans Hypothetical
           protein Y17G7B.5a protein.
          Length = 881

 Score = 46.0 bits (104), Expect = 9e-06
 Identities = 28/119 (23%), Positives = 50/119 (42%), Gaps = 1/119 (0%)
 Frame = +3

Query: 27  FQKFQELKIQEHSDQVPVGHIPRQLSVYCRGETTRRAQPGDHVAVVGIFLPLLNAGFRQI 206
           +  +Q + +QE  ++V  G +PR   V   G+     +PGD + V G++    + G    
Sbjct: 346 YHNYQRITMQESPNKVAAGRLPRSKDVILLGDLCDSCKPGDEIEVTGVYTNNFD-GSLNY 404

Query: 207 VQGL-LSDTYLEAHGVTCLNQSDXXXXXXXXXXXXXXXXXXXXXYSRMARSLAPEIYGH 380
            QG  + +T + A+ +T  ++                         R+  S+AP IYGH
Sbjct: 405 KQGFPVFNTLIHANHITNKDKMASDQLTDEDIKAIRELSQDPNISQRVFSSIAPSIYGH 463


>Z81039-5|CAB02770.1|  812|Caenorhabditis elegans Hypothetical
           protein C25D7.6 protein.
          Length = 812

 Score = 43.2 bits (97), Expect = 6e-05
 Identities = 30/120 (25%), Positives = 47/120 (39%)
 Frame = +3

Query: 21  SRFQKFQELKIQEHSDQVPVGHIPRQLSVYCRGETTRRAQPGDHVAVVGIFLPLLNAGFR 200
           S ++  Q   IQE  +  P G +PR +      +   R +PGD V ++G+F  L N    
Sbjct: 196 SVYKDHQTFTIQELPESAPAGQLPRAVDCVADLDLADRVKPGDRVRIIGVFRVLPNKQ-N 254

Query: 201 QIVQGLLSDTYLEAHGVTCLNQSDXXXXXXXXXXXXXXXXXXXXXYSRMARSLAPEIYGH 380
            +  G      +  H +  L++                       +  +ARSLAP I GH
Sbjct: 255 GVSSGSFRSIIIINH-IQMLSKEVIPNFEPQDVKDVRKISKSRNPFELLARSLAPSICGH 313


>Z82053-9|CAJ85768.1|  189|Caenorhabditis elegans Hypothetical
           protein T26E3.3b protein.
          Length = 189

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 21/61 (34%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
 Frame = +3

Query: 93  RQLSVYCRGETTRRAQPGDHVAVVGIFLPLLNAGFRQIVQGLL--SDTYLEAHGVTCLNQ 266
           R L  Y R  T+ R      V V GIF+  L  G      GLL  +D  LE +G+  L +
Sbjct: 46  RPLGFYIRDGTSVRVTERGVVKVSGIFISRLVDGGLAESTGLLGVNDEVLEVNGIEVLGK 105

Query: 267 S 269
           +
Sbjct: 106 T 106


>Z82053-8|CAB61018.2|  309|Caenorhabditis elegans Hypothetical
           protein T26E3.3a protein.
          Length = 309

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 21/61 (34%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
 Frame = +3

Query: 93  RQLSVYCRGETTRRAQPGDHVAVVGIFLPLLNAGFRQIVQGLL--SDTYLEAHGVTCLNQ 266
           R L  Y R  T+ R      V V GIF+  L  G      GLL  +D  LE +G+  L +
Sbjct: 166 RPLGFYIRDGTSVRVTERGVVKVSGIFISRLVDGGLAESTGLLGVNDEVLEVNGIEVLGK 225

Query: 267 S 269
           +
Sbjct: 226 T 226


>AF070968-1|AAD15926.1|  309|Caenorhabditis elegans PAR-6 protein.
          Length = 309

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 21/61 (34%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
 Frame = +3

Query: 93  RQLSVYCRGETTRRAQPGDHVAVVGIFLPLLNAGFRQIVQGLL--SDTYLEAHGVTCLNQ 266
           R L  Y R  T+ R      V V GIF+  L  G      GLL  +D  LE +G+  L +
Sbjct: 166 RPLGFYIRDGTSVRVTERGVVKVSGIFISRLVDGGLAESTGLLGVNDEVLEVNGIEVLGK 225

Query: 267 S 269
           +
Sbjct: 226 T 226


>Z81476-2|CAB03918.1| 1469|Caenorhabditis elegans Hypothetical protein
            C25F9.2 protein.
          Length = 1469

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = -3

Query: 209  DDLPEAGVEQRQEDADDGDVVPGLSAP-RRLPATVHRQL 96
            D+LP AG E R       DV+P  SA    LP  +H++L
Sbjct: 1100 DNLPHAGEELRYRGLVKCDVLPPKSARIGILPQRIHKKL 1138


>AF067621-1|AAC17540.2| 4368|Caenorhabditis elegans Hypothetical
            protein F55F10.1 protein.
          Length = 4368

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -3

Query: 209  DDLPEAGVEQRQEDADDGD 153
            D++PE G     ED DDGD
Sbjct: 3806 DEIPEKGEIDEAEDEDDGD 3824


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,591,964
Number of Sequences: 27780
Number of extensions: 125066
Number of successful extensions: 359
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 346
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 356
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 567749674
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)