Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0007_B23
(584 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC664.04c |rps1602|rps16-2, rps16|40S ribosomal protein S16|Sc... 110 1e-25
SPBC18H10.14 |rps1601|rps16-1|40S ribosomal protein S16|Schizosa... 110 1e-25
SPAC29A4.03c |||mitochondrial ribosomal protein subunit S9|Schiz... 33 0.041
SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr ... 29 0.50
SPBC106.04 |ada1||adenosine deaminase Ada1 |Schizosaccharomyces ... 25 6.2
SPCC1223.12c |meu10||GPI anchored cell surface protein |Schizosa... 25 6.2
SPBC3D6.02 |but2||But2 family protein But2 |Schizosaccharomyces ... 25 6.2
SPAC2F3.05c |||xylose and arabinose reductase |Schizosaccharomyc... 25 8.1
>SPAC664.04c |rps1602|rps16-2, rps16|40S ribosomal protein
S16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 140
Score = 110 bits (265), Expect = 1e-25
Identities = 61/141 (43%), Positives = 80/141 (56%)
Frame = +2
Query: 38 IQAVQVFGRKKTATAVAYCKRGHGVLRVNGRPLDLVEPRLLQLQTTGTYPFARQGKVLWC 217
+Q+VQ FG+K ATAVA+CK G G+++VNG PL LV+P +L+++ A K
Sbjct: 1 MQSVQCFGKKGNATAVAHCKVGKGLIKVNGAPLSLVQPEILRMKVYEPILVAGADKFAGV 60
Query: 218 GY*SDCKRWWHMLHRFMQSDXXXXXXXXXXTRHYVHHPSKKEIKDILLQYDRSLLVADPR 397
H+ + + +V SK E+K L+ YDR+LLVADPR
Sbjct: 61 DIRVRVSGGGHVSQIYAIRQAISKAIVAYYQK-FVDEHSKAELKKALITYDRTLLVADPR 119
Query: 398 RCEPKKFGGPGARARYQKSYR 460
R EPKKFGG GARAR QKSYR
Sbjct: 120 RMEPKKFGGHGARARQQKSYR 140
Score = 40.7 bits (91), Expect = 2e-04
Identities = 16/21 (76%), Positives = 21/21 (100%)
Frame = +1
Query: 250 HVAQVYAIRQAISKALIAFYQ 312
HV+Q+YAIRQAISKA++A+YQ
Sbjct: 71 HVSQIYAIRQAISKAIVAYYQ 91
Score = 39.1 bits (87), Expect = 5e-04
Identities = 18/36 (50%), Positives = 24/36 (66%)
Frame = +3
Query: 129 APSTW*NPDFFSYKLQEPILLLGKEKFSGVDIRVTV 236
AP + P+ K+ EPIL+ G +KF+GVDIRV V
Sbjct: 31 APLSLVQPEILRMKVYEPILVAGADKFAGVDIRVRV 66
>SPBC18H10.14 |rps1601|rps16-1|40S ribosomal protein
S16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 140
Score = 110 bits (265), Expect = 1e-25
Identities = 61/141 (43%), Positives = 80/141 (56%)
Frame = +2
Query: 38 IQAVQVFGRKKTATAVAYCKRGHGVLRVNGRPLDLVEPRLLQLQTTGTYPFARQGKVLWC 217
+Q+VQ FG+K ATAVA+CK G G+++VNG PL LV+P +L+++ A K
Sbjct: 1 MQSVQCFGKKGNATAVAHCKVGKGLIKVNGAPLSLVQPEILRMKVYEPILVAGADKFAGV 60
Query: 218 GY*SDCKRWWHMLHRFMQSDXXXXXXXXXXTRHYVHHPSKKEIKDILLQYDRSLLVADPR 397
H+ + + +V SK E+K L+ YDR+LLVADPR
Sbjct: 61 DIRVRVSGGGHVSQIYAIRQAISKAIVAYYQK-FVDEHSKAELKKALITYDRTLLVADPR 119
Query: 398 RCEPKKFGGPGARARYQKSYR 460
R EPKKFGG GARAR QKSYR
Sbjct: 120 RMEPKKFGGHGARARQQKSYR 140
Score = 40.7 bits (91), Expect = 2e-04
Identities = 16/21 (76%), Positives = 21/21 (100%)
Frame = +1
Query: 250 HVAQVYAIRQAISKALIAFYQ 312
HV+Q+YAIRQAISKA++A+YQ
Sbjct: 71 HVSQIYAIRQAISKAIVAYYQ 91
Score = 39.1 bits (87), Expect = 5e-04
Identities = 18/36 (50%), Positives = 24/36 (66%)
Frame = +3
Query: 129 APSTW*NPDFFSYKLQEPILLLGKEKFSGVDIRVTV 236
AP + P+ K+ EPIL+ G +KF+GVDIRV V
Sbjct: 31 APLSLVQPEILRMKVYEPILVAGADKFAGVDIRVRV 66
>SPAC29A4.03c |||mitochondrial ribosomal protein subunit
S9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 132
Score = 32.7 bits (71), Expect = 0.041
Identities = 31/129 (24%), Positives = 50/129 (38%)
Frame = +2
Query: 59 GRKKTATAVAYCKRGHGVLRVNGRPLDLVEPRLLQLQTTGTYPFARQGKVLWCGY*SDCK 238
G++K++ A G G VNG P D+ R++ + YP A ++ Y
Sbjct: 12 GKRKSSKATVKMLPGTGKFYVNGSPFDVYFQRMVH-RKHAVYPLAACNRL--TNY----- 63
Query: 239 RWWHMLHRFMQSDXXXXXXXXXXTRHYVHHPSKKEIKDILLQYDRSLLVADPRRCEPKKF 418
W +H + + PS K++ D ++ D R+ E KK
Sbjct: 64 NVWATVHGGGPTGQSGAVHAAISKSLILQEPSLKQVIK-----DTHCVLNDKRKVERKKT 118
Query: 419 GGPGARARY 445
G P AR +Y
Sbjct: 119 GQPKARKKY 127
>SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr
2|||Manual
Length = 673
Score = 29.1 bits (62), Expect = 0.50
Identities = 9/27 (33%), Positives = 17/27 (62%)
Frame = +3
Query: 453 PTVNIISICIVWYRLDLFSLINAIPLG 533
P V+ +++C+ W ++ FSL+ P G
Sbjct: 434 PEVSAVTLCLFWNKMTRFSLVVGAPFG 460
>SPBC106.04 |ada1||adenosine deaminase Ada1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 846
Score = 25.4 bits (53), Expect = 6.2
Identities = 8/29 (27%), Positives = 17/29 (58%)
Frame = +2
Query: 326 HPSKKEIKDILLQYDRSLLVADPRRCEPK 412
HPS ++++++ +YD +DP P+
Sbjct: 771 HPSNHDLEELIHKYDAMTGTSDPLSASPR 799
>SPCC1223.12c |meu10||GPI anchored cell surface protein
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 416
Score = 25.4 bits (53), Expect = 6.2
Identities = 14/49 (28%), Positives = 25/49 (51%)
Frame = +3
Query: 339 RRSKTFYFNTTEVCWSLTLVVASPRNSVVQAPVPDTRNPTVNIISICIV 485
R S FY T+ WS+ + A+P + +T+N ++++S C V
Sbjct: 2 RLSSRFYLFTSFTAWSVVIAGATPAVCGAPEYIIETQN-DLDVLSNCQV 49
>SPBC3D6.02 |but2||But2 family protein But2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 390
Score = 25.4 bits (53), Expect = 6.2
Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Frame = -3
Query: 123 FTRNTPCPRLQYA-TAVAVFLRPKTCTAWIGS 31
+T+N PCPR ++ T P T +WI S
Sbjct: 341 YTQNIPCPRAGHSHTYELAPASPNTSISWIQS 372
>SPAC2F3.05c |||xylose and arabinose reductase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 275
Score = 25.0 bits (52), Expect = 8.1
Identities = 11/36 (30%), Positives = 17/36 (47%)
Frame = -3
Query: 300 DKGFRDGLSDCINLCNMCHHLLQSL*YPHQRTFPCL 193
+KG +G I + N H +Q L H + PC+
Sbjct: 125 EKGVEEGKLRAIGVSNFGPHHIQELLDSHPKIIPCV 160
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,590,684
Number of Sequences: 5004
Number of extensions: 54264
Number of successful extensions: 167
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 252150250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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