Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0007_B23
(584 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0152 - 1168928-1169377 125 3e-29
11_01_0155 - 1287003-1287452 125 3e-29
10_05_0040 - 8463585-8464396,8464664-8465273,8465708-8466169 29 2.1
02_05_0330 - 27996080-27996757,27996836-27997366,27998124-27998303 29 2.1
03_02_0708 + 10577931-10579511,10579613-10579706,10580694-105808... 29 2.7
09_06_0087 + 20771329-20771450,20771462-20771771,20771893-207726... 29 3.6
01_03_0227 + 13967966-13968559 28 6.3
11_06_0727 - 26709399-26710863,26713529-26713898,26714115-26714421 27 8.3
>12_01_0152 - 1168928-1169377
Length = 149
Score = 125 bits (301), Expect = 3e-29
Identities = 67/145 (46%), Positives = 86/145 (59%), Gaps = 1/145 (0%)
Frame = +2
Query: 29 REPIQAVQVFGRKKTATAVAYCKRGHGVLRVNGRPLDLVEPRLLQLQTTGTYPFARQGKV 208
R P VQ FGRKKTA AV+YCK G G+++VNG P++L+ P +L+L+ P G+
Sbjct: 7 RPPPGTVQCFGRKKTAVAVSYCKPGRGLIKVNGVPIELIRPEMLRLKAFE--PILLAGRS 64
Query: 209 LWCGY*SDCK-RWWHMLHRFMQSDXXXXXXXXXXTRHYVHHPSKKEIKDILLQYDRSLLV 385
+ + R + + YV SKKE+KDI +YDR+LLV
Sbjct: 65 RFKDIDMRIRVRGGGKTSQIYAIRQAIAKALVAYYQKYVDEASKKEVKDIFARYDRTLLV 124
Query: 386 ADPRRCEPKKFGGPGARARYQKSYR 460
ADPRRCEPKKFGG GARAR+QKSYR
Sbjct: 125 ADPRRCEPKKFGGRGARARFQKSYR 149
Score = 35.5 bits (78), Expect = 0.031
Identities = 14/19 (73%), Positives = 19/19 (100%)
Frame = +1
Query: 256 AQVYAIRQAISKALIAFYQ 312
+Q+YAIRQAI+KAL+A+YQ
Sbjct: 82 SQIYAIRQAIAKALVAYYQ 100
Score = 31.9 bits (69), Expect = 0.39
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +3
Query: 150 PDFFSYKLQEPILLLGKEKFSGVDIRVTVK 239
P+ K EPILL G+ +F +D+R+ V+
Sbjct: 47 PEMLRLKAFEPILLAGRSRFKDIDMRIRVR 76
>11_01_0155 - 1287003-1287452
Length = 149
Score = 125 bits (301), Expect = 3e-29
Identities = 67/145 (46%), Positives = 86/145 (59%), Gaps = 1/145 (0%)
Frame = +2
Query: 29 REPIQAVQVFGRKKTATAVAYCKRGHGVLRVNGRPLDLVEPRLLQLQTTGTYPFARQGKV 208
R P VQ FGRKKTA AV+YCK G G+++VNG P++L+ P +L+L+ P G+
Sbjct: 7 RPPPGTVQCFGRKKTAVAVSYCKPGRGLIKVNGVPIELIRPEMLRLKAFE--PILLAGRS 64
Query: 209 LWCGY*SDCK-RWWHMLHRFMQSDXXXXXXXXXXTRHYVHHPSKKEIKDILLQYDRSLLV 385
+ + R + + YV SKKE+KDI +YDR+LLV
Sbjct: 65 RFKDIDMRIRVRGGGKTSQIYAIRQAIAKALVAYYQKYVDEASKKEVKDIFARYDRTLLV 124
Query: 386 ADPRRCEPKKFGGPGARARYQKSYR 460
ADPRRCEPKKFGG GARAR+QKSYR
Sbjct: 125 ADPRRCEPKKFGGRGARARFQKSYR 149
Score = 35.5 bits (78), Expect = 0.031
Identities = 14/19 (73%), Positives = 19/19 (100%)
Frame = +1
Query: 256 AQVYAIRQAISKALIAFYQ 312
+Q+YAIRQAI+KAL+A+YQ
Sbjct: 82 SQIYAIRQAIAKALVAYYQ 100
Score = 31.9 bits (69), Expect = 0.39
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +3
Query: 150 PDFFSYKLQEPILLLGKEKFSGVDIRVTVK 239
P+ K EPILL G+ +F +D+R+ V+
Sbjct: 47 PEMLRLKAFEPILLAGRSRFKDIDMRIRVR 76
>10_05_0040 - 8463585-8464396,8464664-8465273,8465708-8466169
Length = 627
Score = 29.5 bits (63), Expect = 2.1
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = -3
Query: 453 DFWYLARAPGPPNFLGSQRRGSATSKLLSY*SRMSLISFLDGWC-T*CLV 307
D LA+ P N LG + RG+ K++ Y ++ + WC T CLV
Sbjct: 567 DITLLAQLPSLTN-LGLRMRGAPKQKIIIYKKAFPVLRYFKFWCSTPCLV 615
>02_05_0330 - 27996080-27996757,27996836-27997366,27998124-27998303
Length = 462
Score = 29.5 bits (63), Expect = 2.1
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +1
Query: 76 NCGSILQTRTWSVACKWTPPRPGRTQTSS 162
+C S +Q R+ SV W PP G+T+T S
Sbjct: 275 DCVSAMQQRSSSVRLIWGPPGTGKTKTIS 303
>03_02_0708 +
10577931-10579511,10579613-10579706,10580694-10580856,
10581286-10581491,10581854-10582062
Length = 750
Score = 29.1 bits (62), Expect = 2.7
Identities = 16/59 (27%), Positives = 28/59 (47%)
Frame = +3
Query: 369 TEVCWSLTLVVASPRNSVVQAPVPDTRNPTVNIISICIVWYRLDLFSLINAIPLGVFNK 545
TE+ S L S + ++ P + C+ YR+DLFS+I+ + G F++
Sbjct: 504 TEIMVSKNLQTCSDCHEWMKIVSKTDAAPVKTVGQYCLENYRIDLFSIISTVLTGGFSR 562
>09_06_0087 +
20771329-20771450,20771462-20771771,20771893-20772672,
20772854-20774002
Length = 786
Score = 28.7 bits (61), Expect = 3.6
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = -2
Query: 223 ISTPENFSLPSKRIGSCSL*LKKSGFYQVEGASIYTQH 110
++ P +F + +R C+ L SG + VEGASI +H
Sbjct: 203 VTRPSDFLISFRREEDCASVLGWSGRFSVEGASISFRH 240
>01_03_0227 + 13967966-13968559
Length = 197
Score = 27.9 bits (59), Expect = 6.3
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +1
Query: 412 EIRWSRRPCQIPEILPLISF 471
E RW+RRP Q+P + +SF
Sbjct: 71 EQRWTRRPTQVPPPITAVSF 90
>11_06_0727 - 26709399-26710863,26713529-26713898,26714115-26714421
Length = 713
Score = 27.5 bits (58), Expect = 8.3
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = +3
Query: 318 MYTTHLRRRSKTFYFNTTEVCWSLTLVVASPRNSVVQAPV 437
+ TTH RR FYFN+ SL ++V +V++ V
Sbjct: 278 LLTTHPRRYKVFFYFNSVAFVASLVIMVMLQNEFLVRSHV 317
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,509,222
Number of Sequences: 37544
Number of extensions: 380586
Number of successful extensions: 948
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 924
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 948
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1376330256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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