Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0007_B23
(584 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M60854-1|AAA60583.1| 146|Homo sapiens RPS16 protein. 151 2e-36
BC007977-1|AAH07977.1| 146|Homo sapiens ribosomal protein S16 p... 151 2e-36
BC004324-1|AAH04324.1| 146|Homo sapiens ribosomal protein S16 p... 151 2e-36
AB061841-1|BAB79479.1| 146|Homo sapiens ribosomal protein S16 p... 151 2e-36
BC071674-1|AAH71674.1| 152|Homo sapiens RPS16 protein protein. 78 2e-14
AK097937-1|BAC85106.1| 178|Homo sapiens protein ( Homo sapiens ... 41 0.004
DQ120650-1|ABB92435.1| 384|Homo sapiens RBM1 protein. 31 4.0
BC012942-1|AAH12942.1| 390|Homo sapiens RNA binding motif prote... 31 4.0
AL139416-2|CAI21693.1| 390|Homo sapiens RNA binding motif prote... 31 4.0
AK024429-1|BAB15719.1| 1430|Homo sapiens FLJ00018 protein protein. 31 4.0
BC054882-1|AAH54882.1| 204|Homo sapiens Unknown (protein for IM... 29 9.1
AL391827-3|CAI16232.1| 689|Homo sapiens novel protein protein. 29 9.1
AL391827-2|CAI16231.1| 198|Homo sapiens novel protein protein. 29 9.1
>M60854-1|AAA60583.1| 146|Homo sapiens RPS16 protein.
Length = 146
Score = 151 bits (366), Expect = 2e-36
Identities = 80/144 (55%), Positives = 97/144 (67%), Gaps = 2/144 (1%)
Frame = +2
Query: 35 PIQAVQVFGRKKTATAVAYCKRGHGVLRVNGRPLDLVEPRLLQLQTTGTYPFARQGKVLW 214
P+Q+VQVFGRKKTATAVA+CKRG+G+++VNGRPL+++EPR LQ + P GK +
Sbjct: 6 PLQSVQVFGRKKTATAVAHCKRGNGLIKVNGRPLEMIEPRTLQYKLLE--PVLLLGKERF 63
Query: 215 CGY*SDC--KRWWHMLHRFMQSDXXXXXXXXXXTRHYVHHPSKKEIKDILLQYDRSLLVA 388
G K H+ + + YV SKKEIKDIL+QYDR+LLVA
Sbjct: 64 AGVDIRVRVKGGGHVAQIYAIRQSISKALVAYYQK-YVDEASKKEIKDILIQYDRTLLVA 122
Query: 389 DPRRCEPKKFGGPGARARYQKSYR 460
DPRRCE KKFGGPGARARYQKSYR
Sbjct: 123 DPRRCESKKFGGPGARARYQKSYR 146
>BC007977-1|AAH07977.1| 146|Homo sapiens ribosomal protein S16
protein.
Length = 146
Score = 151 bits (366), Expect = 2e-36
Identities = 80/144 (55%), Positives = 97/144 (67%), Gaps = 2/144 (1%)
Frame = +2
Query: 35 PIQAVQVFGRKKTATAVAYCKRGHGVLRVNGRPLDLVEPRLLQLQTTGTYPFARQGKVLW 214
P+Q+VQVFGRKKTATAVA+CKRG+G+++VNGRPL+++EPR LQ + P GK +
Sbjct: 6 PLQSVQVFGRKKTATAVAHCKRGNGLIKVNGRPLEMIEPRTLQYKLLE--PVLLLGKERF 63
Query: 215 CGY*SDC--KRWWHMLHRFMQSDXXXXXXXXXXTRHYVHHPSKKEIKDILLQYDRSLLVA 388
G K H+ + + YV SKKEIKDIL+QYDR+LLVA
Sbjct: 64 AGVDIRVRVKGGGHVAQIYAIRQSISKALVAYYQK-YVDEASKKEIKDILIQYDRTLLVA 122
Query: 389 DPRRCEPKKFGGPGARARYQKSYR 460
DPRRCE KKFGGPGARARYQKSYR
Sbjct: 123 DPRRCESKKFGGPGARARYQKSYR 146
>BC004324-1|AAH04324.1| 146|Homo sapiens ribosomal protein S16
protein.
Length = 146
Score = 151 bits (366), Expect = 2e-36
Identities = 80/144 (55%), Positives = 97/144 (67%), Gaps = 2/144 (1%)
Frame = +2
Query: 35 PIQAVQVFGRKKTATAVAYCKRGHGVLRVNGRPLDLVEPRLLQLQTTGTYPFARQGKVLW 214
P+Q+VQVFGRKKTATAVA+CKRG+G+++VNGRPL+++EPR LQ + P GK +
Sbjct: 6 PLQSVQVFGRKKTATAVAHCKRGNGLIKVNGRPLEMIEPRTLQYKLLE--PVLLLGKERF 63
Query: 215 CGY*SDC--KRWWHMLHRFMQSDXXXXXXXXXXTRHYVHHPSKKEIKDILLQYDRSLLVA 388
G K H+ + + YV SKKEIKDIL+QYDR+LLVA
Sbjct: 64 AGVDIRVRVKGGGHVAQIYAIRQSISKALVAYYQK-YVDEASKKEIKDILIQYDRTLLVA 122
Query: 389 DPRRCEPKKFGGPGARARYQKSYR 460
DPRRCE KKFGGPGARARYQKSYR
Sbjct: 123 DPRRCESKKFGGPGARARYQKSYR 146
>AB061841-1|BAB79479.1| 146|Homo sapiens ribosomal protein S16
protein.
Length = 146
Score = 151 bits (366), Expect = 2e-36
Identities = 80/144 (55%), Positives = 97/144 (67%), Gaps = 2/144 (1%)
Frame = +2
Query: 35 PIQAVQVFGRKKTATAVAYCKRGHGVLRVNGRPLDLVEPRLLQLQTTGTYPFARQGKVLW 214
P+Q+VQVFGRKKTATAVA+CKRG+G+++VNGRPL+++EPR LQ + P GK +
Sbjct: 6 PLQSVQVFGRKKTATAVAHCKRGNGLIKVNGRPLEMIEPRTLQYKLLE--PVLLLGKERF 63
Query: 215 CGY*SDC--KRWWHMLHRFMQSDXXXXXXXXXXTRHYVHHPSKKEIKDILLQYDRSLLVA 388
G K H+ + + YV SKKEIKDIL+QYDR+LLVA
Sbjct: 64 AGVDIRVRVKGGGHVAQIYAIRQSISKALVAYYQK-YVDEASKKEIKDILIQYDRTLLVA 122
Query: 389 DPRRCEPKKFGGPGARARYQKSYR 460
DPRRCE KKFGGPGARARYQKSYR
Sbjct: 123 DPRRCESKKFGGPGARARYQKSYR 146
>BC071674-1|AAH71674.1| 152|Homo sapiens RPS16 protein protein.
Length = 152
Score = 78.2 bits (184), Expect = 2e-14
Identities = 32/43 (74%), Positives = 42/43 (97%)
Frame = +2
Query: 35 PIQAVQVFGRKKTATAVAYCKRGHGVLRVNGRPLDLVEPRLLQ 163
P+Q+VQVFGRKKTATAVA+CKRG+G+++VNGRPL+++EPR LQ
Sbjct: 6 PLQSVQVFGRKKTATAVAHCKRGNGLIKVNGRPLEMIEPRTLQ 48
Score = 46.8 bits (106), Expect = 6e-05
Identities = 21/30 (70%), Positives = 24/30 (80%)
Frame = +3
Query: 150 PDFFSYKLQEPILLLGKEKFSGVDIRVTVK 239
P YKL EP+LLLGKE+F+GVDIRV VK
Sbjct: 44 PRTLQYKLLEPVLLLGKERFAGVDIRVRVK 73
>AK097937-1|BAC85106.1| 178|Homo sapiens protein ( Homo sapiens
cDNA FLJ40618 fis, clone THYMU2013089, moderately
similar to 40S RIBOSOMAL PROTEIN S16. ).
Length = 178
Score = 40.7 bits (91), Expect = 0.004
Identities = 20/44 (45%), Positives = 30/44 (68%)
Frame = +2
Query: 38 IQAVQVFGRKKTATAVAYCKRGHGVLRVNGRPLDLVEPRLLQLQ 169
+Q+VQ+F K+ A AV C+ G G +R+N PL+++ RLL LQ
Sbjct: 18 LQSVQIFTYKEMAIAVVLCRCGSGFIRMNEGPLEMI--RLLTLQ 59
Score = 39.1 bits (87), Expect = 0.011
Identities = 31/96 (32%), Positives = 41/96 (42%)
Frame = +3
Query: 165 YKLQEPILLLGKEKFSGVDIRVTVKXXXXXXXXLCNQTSHL*SPYRFLPDTMYTTHLRRR 344
YKL E LLL KE+ +G+DI V VK ++ +P Y ++
Sbjct: 60 YKLLELGLLLDKEQLAGMDIHVRVKGSGHVVQIYA-VLQYI--SKALVP--CYPKYVDEA 114
Query: 345 SKTFYFNTTEVCWSLTLVVASPRNSVVQAPVPDTRN 452
S+ T CW T V +PRN PV TRN
Sbjct: 115 SEEIKDTLTRPCWWFTPVAMNPRNLQALVPVLTTRN 150
>DQ120650-1|ABB92435.1| 384|Homo sapiens RBM1 protein.
Length = 384
Score = 30.7 bits (66), Expect = 4.0
Identities = 22/74 (29%), Positives = 28/74 (37%)
Frame = +2
Query: 311 RHYVHHPSKKEIKDILLQYDRSLLVADPRRCEPKKFGGPGARARYQKSYR*YHFNLHRLV 490
R Y HPS +D Y S A R P +GG Y S Y +
Sbjct: 270 RDYSDHPSGGSYRDSYESYGNSRS-APLTRGPPPSYGGSSRYDDYSSSRDGYGGSRDSYS 328
Query: 491 SSRFVFFNQCDTIG 532
SSR ++ CD +G
Sbjct: 329 SSRSDLYSSCDRVG 342
>BC012942-1|AAH12942.1| 390|Homo sapiens RNA binding motif protein,
X-linked-like 1 protein.
Length = 390
Score = 30.7 bits (66), Expect = 4.0
Identities = 22/74 (29%), Positives = 28/74 (37%)
Frame = +2
Query: 311 RHYVHHPSKKEIKDILLQYDRSLLVADPRRCEPKKFGGPGARARYQKSYR*YHFNLHRLV 490
R Y HPS +D Y S A R P +GG Y S Y +
Sbjct: 270 RDYSDHPSGGSYRDSYESYGNSRS-APLTRGPPPSYGGSSRYDDYSSSRDGYGGSRDSYS 328
Query: 491 SSRFVFFNQCDTIG 532
SSR ++ CD +G
Sbjct: 329 SSRSDLYSSCDRVG 342
>AL139416-2|CAI21693.1| 390|Homo sapiens RNA binding motif protein,
X-linked-like 1 protein.
Length = 390
Score = 30.7 bits (66), Expect = 4.0
Identities = 22/74 (29%), Positives = 28/74 (37%)
Frame = +2
Query: 311 RHYVHHPSKKEIKDILLQYDRSLLVADPRRCEPKKFGGPGARARYQKSYR*YHFNLHRLV 490
R Y HPS +D Y S A R P +GG Y S Y +
Sbjct: 270 RDYSDHPSGGSYRDSYESYGNSRS-APLTRGPPPSYGGSSRYDDYSSSRDGYGGSRDSYS 328
Query: 491 SSRFVFFNQCDTIG 532
SSR ++ CD +G
Sbjct: 329 SSRSDLYSSCDRVG 342
>AK024429-1|BAB15719.1| 1430|Homo sapiens FLJ00018 protein protein.
Length = 1430
Score = 30.7 bits (66), Expect = 4.0
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = +1
Query: 37 NPSRTSFRP*ENCNCGSILQTRTWSVACKWTPPRPGRTQTSSAT 168
+PS R E C+CG++ +TRT A PR + TS +T
Sbjct: 58 SPSLGCGRRGEVCDCGTVCETRTAPAAPTMASPRGSGSSTSLST 101
>BC054882-1|AAH54882.1| 204|Homo sapiens Unknown (protein for
IMAGE:6451327) protein.
Length = 204
Score = 29.5 bits (63), Expect = 9.1
Identities = 11/28 (39%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Frame = +2
Query: 332 SKKEIKD-ILLQYDRSLLVADPRRCEPK 412
SKK +K+ ++L YD + DP +C P+
Sbjct: 17 SKKPLKEKVVLMYDEIFMTEDPSKCSPR 44
>AL391827-3|CAI16232.1| 689|Homo sapiens novel protein protein.
Length = 689
Score = 29.5 bits (63), Expect = 9.1
Identities = 11/28 (39%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Frame = +2
Query: 332 SKKEIKD-ILLQYDRSLLVADPRRCEPK 412
SKK +K+ ++L YD + DP +C P+
Sbjct: 17 SKKPLKEKVVLMYDEIFMTEDPSKCSPR 44
>AL391827-2|CAI16231.1| 198|Homo sapiens novel protein protein.
Length = 198
Score = 29.5 bits (63), Expect = 9.1
Identities = 11/28 (39%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Frame = +2
Query: 332 SKKEIKD-ILLQYDRSLLVADPRRCEPK 412
SKK +K+ ++L YD + DP +C P+
Sbjct: 17 SKKPLKEKVVLMYDEIFMTEDPSKCSPR 44
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 95,536,748
Number of Sequences: 237096
Number of extensions: 2189926
Number of successful extensions: 4650
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 4461
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4637
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 6098631048
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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