Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0007_B23
(584 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z78413-6|CAB01658.1| 144|Caenorhabditis elegans Hypothetical pr... 125 2e-29
U40945-1|AAA81719.2| 656|Caenorhabditis elegans Hypothetical pr... 29 2.4
AF039052-3|AAF98627.1| 391|Caenorhabditis elegans Hypothetical ... 29 2.4
Z93372-4|CAB07546.1| 301|Caenorhabditis elegans Hypothetical pr... 28 5.6
Z67995-5|CAA91945.2| 176|Caenorhabditis elegans Hypothetical pr... 28 5.6
L11247-4|AAK84520.1| 392|Caenorhabditis elegans Hypothetical pr... 28 5.6
U55363-1|AAK71420.1| 340|Caenorhabditis elegans Serpentine rece... 27 7.4
AF039716-6|AAY55880.1| 215|Caenorhabditis elegans Hypothetical ... 27 7.4
Z36752-5|CAA85328.2| 533|Caenorhabditis elegans Hypothetical pr... 27 9.8
>Z78413-6|CAB01658.1| 144|Caenorhabditis elegans Hypothetical
protein T01C3.6 protein.
Length = 144
Score = 125 bits (302), Expect = 2e-29
Identities = 64/141 (45%), Positives = 87/141 (61%)
Frame = +2
Query: 38 IQAVQVFGRKKTATAVAYCKRGHGVLRVNGRPLDLVEPRLLQLQTTGTYPFARQGKVLWC 217
+Q+VQ FGRKKTATAVA+CK+G G+++VNGRPL+ +EP++L+++ + +
Sbjct: 5 VQSVQTFGRKKTATAVAHCKKGQGLIKVNGRPLEFLEPQILRIKLQEPLLLVGKERFQDV 64
Query: 218 GY*SDCKRWWHMLHRFMQSDXXXXXXXXXXTRHYVHHPSKKEIKDILLQYDRSLLVADPR 397
H+ + + YV SK+E+K+I YD+SLLVADPR
Sbjct: 65 DIRIRVSGGGHVAQIYAVRQALAKALVAYYHK-YVDEQSKRELKNIFAAYDKSLLVADPR 123
Query: 398 RCEPKKFGGPGARARYQKSYR 460
R E KKFGGPGARARYQKSYR
Sbjct: 124 RRESKKFGGPGARARYQKSYR 144
Score = 40.7 bits (91), Expect = 7e-04
Identities = 18/35 (51%), Positives = 23/35 (65%)
Frame = +3
Query: 132 PSTW*NPDFFSYKLQEPILLLGKEKFSGVDIRVTV 236
P + P KLQEP+LL+GKE+F VDIR+ V
Sbjct: 36 PLEFLEPQILRIKLQEPLLLVGKERFQDVDIRIRV 70
Score = 38.3 bits (85), Expect = 0.004
Identities = 14/20 (70%), Positives = 20/20 (100%)
Frame = +1
Query: 250 HVAQVYAIRQAISKALIAFY 309
HVAQ+YA+RQA++KAL+A+Y
Sbjct: 75 HVAQIYAVRQALAKALVAYY 94
>U40945-1|AAA81719.2| 656|Caenorhabditis elegans Hypothetical
protein F10D7.1 protein.
Length = 656
Score = 29.1 bits (62), Expect = 2.4
Identities = 15/30 (50%), Positives = 18/30 (60%)
Frame = -2
Query: 265 KPVQHVPPPFTVTLISTPENFSLPSKRIGS 176
K +VPP F LI T EN S+ SKR+ S
Sbjct: 319 KEQTYVPPEFQRYLIETKENRSVRSKRVKS 348
>AF039052-3|AAF98627.1| 391|Caenorhabditis elegans Hypothetical
protein T22D1.5 protein.
Length = 391
Score = 29.1 bits (62), Expect = 2.4
Identities = 11/39 (28%), Positives = 23/39 (58%)
Frame = +3
Query: 312 DTMYTTHLRRRSKTFYFNTTEVCWSLTLVVASPRNSVVQ 428
D +++++L RRS Y +T EV W + ++ + N ++
Sbjct: 213 DRIFSSNLVRRSTGNYLDTKEVTWLIFAMIGTDENQSIE 251
>Z93372-4|CAB07546.1| 301|Caenorhabditis elegans Hypothetical
protein BE10.4 protein.
Length = 301
Score = 27.9 bits (59), Expect = 5.6
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +2
Query: 308 TRHYVHHPSKKEIKDILLQYDRSLLVADPRRCE 406
T ++ +KE+ D+ QYDRS+ + D R E
Sbjct: 148 TAYFCDEVQQKEVGDLFHQYDRSIEIIDKVRHE 180
>Z67995-5|CAA91945.2| 176|Caenorhabditis elegans Hypothetical
protein M153.3 protein.
Length = 176
Score = 27.9 bits (59), Expect = 5.6
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = -2
Query: 175 CSL*LKKSGFYQVEGASIYTQHSMSSFAVCYRSCSFLTAEN 53
C + +SG + + S+ QHS+ +F VC ++C F + N
Sbjct: 116 CEAFVTRSGMWGRK--SLTCQHSVFAFRVCRKTCGFCASVN 154
>L11247-4|AAK84520.1| 392|Caenorhabditis elegans Hypothetical
protein F09G8.3 protein.
Length = 392
Score = 27.9 bits (59), Expect = 5.6
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +2
Query: 377 LLVADPRRCEPKKFGGPGARARY 445
LL DPR+ E K PGARA++
Sbjct: 365 LLTLDPRKNERSKVNQPGARAKW 387
>U55363-1|AAK71420.1| 340|Caenorhabditis elegans Serpentine
receptor, class h protein30 protein.
Length = 340
Score = 27.5 bits (58), Expect = 7.4
Identities = 12/35 (34%), Positives = 22/35 (62%), Gaps = 3/35 (8%)
Frame = +3
Query: 321 YTTHLRRRSKTFYFNTT---EVCWSLTLVVASPRN 416
+T ++ +K+FY N+ ++ WS +V+SPRN
Sbjct: 161 FTIENQQNAKSFYANSNTIPDMLWSEKYIVSSPRN 195
>AF039716-6|AAY55880.1| 215|Caenorhabditis elegans Hypothetical
protein W03G9.9 protein.
Length = 215
Score = 27.5 bits (58), Expect = 7.4
Identities = 13/38 (34%), Positives = 17/38 (44%)
Frame = +3
Query: 339 RRSKTFYFNTTEVCWSLTLVVASPRNSVVQAPVPDTRN 452
RRS FY N E W + V+ P + Q P + N
Sbjct: 168 RRSAMFYVNIDETRWDTNVWVSFPGETKAQRPHSSSAN 205
>Z36752-5|CAA85328.2| 533|Caenorhabditis elegans Hypothetical
protein F35H8.6 protein.
Length = 533
Score = 27.1 bits (57), Expect = 9.8
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = -2
Query: 583 FFVFFCTVCRIYYLLNT 533
FFV FCT+ IYY + T
Sbjct: 491 FFVIFCTLSIIYYTIRT 507
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,650,403
Number of Sequences: 27780
Number of extensions: 316636
Number of successful extensions: 817
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 799
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 817
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1226509528
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -