Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_B23
         (584 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    25   0.72 
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      24   1.3  
EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholi...    23   2.2  
EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholi...    23   2.2  
EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholi...    23   2.2  
EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholi...    23   2.2  
EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholi...    23   2.2  
EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholi...    23   2.2  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    23   2.2  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    23   2.2  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    23   2.2  
DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    22   3.9  
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    22   5.1  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 24.6 bits (51), Expect = 0.72
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -2

Query: 259  VQHVPPPFTVTLISTPENFSLP 194
            +QH PP ++   +S P+   LP
Sbjct: 1265 LQHAPPAYSCGTVSVPQQQQLP 1286


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = +2

Query: 311 RHYVHHPSKKEIKDILLQYDRSL 379
           + Y  HP+ K ++++   YDR L
Sbjct: 98  KRYQEHPNGKILRELQTDYDRRL 120


>EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 6 protein.
          Length = 461

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = +3

Query: 312 DTMYTTHLRRRSKTFYFNTTEVC 380
           D  +T  +RRR+  ++FN    C
Sbjct: 183 DVTFTIQIRRRTLYYFFNLIVPC 205


>EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 5 protein.
          Length = 461

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = +3

Query: 312 DTMYTTHLRRRSKTFYFNTTEVC 380
           D  +T  +RRR+  ++FN    C
Sbjct: 183 DVTFTIQIRRRTLYYFFNLIVPC 205


>EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 4 protein.
          Length = 461

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = +3

Query: 312 DTMYTTHLRRRSKTFYFNTTEVC 380
           D  +T  +RRR+  ++FN    C
Sbjct: 183 DVTFTIQIRRRTLYYFFNLIVPC 205


>EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 3 protein.
          Length = 461

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = +3

Query: 312 DTMYTTHLRRRSKTFYFNTTEVC 380
           D  +T  +RRR+  ++FN    C
Sbjct: 183 DVTFTIQIRRRTLYYFFNLIVPC 205


>EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 2 protein.
          Length = 461

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = +3

Query: 312 DTMYTTHLRRRSKTFYFNTTEVC 380
           D  +T  +RRR+  ++FN    C
Sbjct: 183 DVTFTIQIRRRTLYYFFNLIVPC 205


>EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 1 protein.
          Length = 461

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = +3

Query: 312 DTMYTTHLRRRSKTFYFNTTEVC 380
           D  +T  +RRR+  ++FN    C
Sbjct: 183 DVTFTIQIRRRTLYYFFNLIVPC 205


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = +3

Query: 312 DTMYTTHLRRRSKTFYFNTTEVC 380
           D  +T  +RRR+  ++FN    C
Sbjct: 251 DVTFTIQIRRRTLYYFFNLIVPC 273


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = +3

Query: 312 DTMYTTHLRRRSKTFYFNTTEVC 380
           D  +T  +RRR+  ++FN    C
Sbjct: 251 DVTFTIQIRRRTLYYFFNLIVPC 273


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 10/24 (41%), Positives = 11/24 (45%)
 Frame = +3

Query: 309 PDTMYTTHLRRRSKTFYFNTTEVC 380
           PD  Y   LRRR   + FN    C
Sbjct: 201 PDITYEIRLRRRPMFYVFNLILPC 224


>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -3

Query: 288 RDGLSDCINLCNM 250
           RD   +CI +CNM
Sbjct: 49  RDAYDNCITVCNM 61


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 7/20 (35%), Positives = 11/20 (55%)
 Frame = -3

Query: 66  LRPKTCTAWIGSRLASCTAA 7
           L P  C +W+   +  CTA+
Sbjct: 106 LGPMLCDSWVSLDILLCTAS 125


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 178,773
Number of Sequences: 438
Number of extensions: 3778
Number of successful extensions: 13
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16993167
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)