Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_B21
         (485 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    26   2.6  
SPBC3H7.02 |||sulfate transporter |Schizosaccharomyces pombe|chr...    26   3.5  
SPBP4H10.17c |||carboxyl methyl esterase|Schizosaccharomyces pom...    26   3.5  
SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharo...    25   4.6  
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    25   4.6  
SPAC1093.02 |||pyridoxamine 5'-phosphate oxidase |Schizosaccharo...    25   8.0  

>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
            Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 26.2 bits (55), Expect = 2.6
 Identities = 10/37 (27%), Positives = 22/37 (59%)
 Frame = -2

Query: 187  QVCRAYLPPSSALNSRVKSVSSPQGTFASTWISSNDS 77
            + CR  L  S ++ ++++++S+ Q    S W+S  D+
Sbjct: 1573 EACRQALTSSKSVRTKLRAISTIQRFPVSEWVSKLDT 1609


>SPBC3H7.02 |||sulfate transporter |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 877

 Score = 25.8 bits (54), Expect = 3.5
 Identities = 28/116 (24%), Positives = 45/116 (38%), Gaps = 6/116 (5%)
 Frame = +3

Query: 126  DTLFTLEFRADEGGKYALHTCNNKYLSAS------GKLQDACTATCLFSAEYHAGALALR 287
            DT   LE  A +  ++     NN ++  +      GK +DA   T   S     G+ A  
Sbjct: 693  DTRKELEIYAGDEVEFHFTDINNDWIKRTLVAAGFGKARDATKYT---SRSIEVGSAAPL 749

Query: 288  DSTGAYLAPIGSKAVLKTRSTAVTRDELFSLEDSLPQAAFVAGLNEKYVSVKQGVD 455
                  +AP  S+ V+ +       DE  ++E S+P      G +   +SV    D
Sbjct: 750  RDIETPMAPGNSRIVMPSSVRVRPFDEEEAIESSIPAIVSEDGADSDTISVSDDKD 805


>SPBP4H10.17c |||carboxyl methyl esterase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 341

 Score = 25.8 bits (54), Expect = 3.5
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = -1

Query: 440 Y*DVFLVQTSDEGSLRKTVFQGEQLVSGDGCGASLQHGLGA 318
           Y D  L    + G+L  T+     L   DGC   LQHG G+
Sbjct: 40  YFDEKLTIPGESGALNGTINGYLTLPQPDGCLLVLQHGAGS 80


>SPBC12C2.02c |ste20|ste16|sterility protein
           Ste20|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1309

 Score = 25.4 bits (53), Expect = 4.6
 Identities = 11/42 (26%), Positives = 24/42 (57%)
 Frame = +3

Query: 321 SKAVLKTRSTAVTRDELFSLEDSLPQAAFVAGLNEKYVSVKQ 446
           S++ L  +   V +++  S +D++       G N+KY+S++Q
Sbjct: 520 SESFLAGKRLTVVKNQAVSNDDNINMVNIPDGSNKKYMSLRQ 561


>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 25.4 bits (53), Expect = 4.6
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +3

Query: 165 GKYALHTCNNKYLSASGKLQDACTATCLFSAEY 263
           G Y ++    K LSASGK  DA +   L   E+
Sbjct: 747 GLYEVYIAYAKILSASGKFDDAMSYLNLVPTEF 779


>SPAC1093.02 |||pyridoxamine 5'-phosphate oxidase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 231

 Score = 24.6 bits (51), Expect = 8.0
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +3

Query: 117 WGEDTLFTLEFRADEGGKYALH 182
           WG   +  LE    +GGKY LH
Sbjct: 189 WGGIRIVPLEIEFWQGGKYRLH 210


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,846,710
Number of Sequences: 5004
Number of extensions: 35111
Number of successful extensions: 135
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 188065158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)