Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_B20
         (450 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16C6.13c |sec27||coatomer beta' subunit |Schizosaccharomyces...    27   1.8  
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa...    26   2.3  
SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces ...    26   3.1  
SPAC27D7.12c |but1|SPAC27D7.12, mug107|neddylation pathway prote...    25   7.1  
SPAC17G8.11c |||mannosyltransferase complex subunit |Schizosacch...    25   7.1  
SPAC19A8.10 |rfp1|mug140|ubiquitin-protein ligase E3 Rfp1|Schizo...    25   7.1  
SPAC513.04 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    25   7.1  
SPBC2F12.08c |ceg1|pce1|mRNA guanylyltransferase Ceg1|Schizosacc...    24   9.4  

>SPBC16C6.13c |sec27||coatomer beta' subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 796

 Score = 26.6 bits (56), Expect = 1.8
 Identities = 13/54 (24%), Positives = 27/54 (50%)
 Frame = +2

Query: 143 STCLMFNQDKGYKKKKRYN*LTANTWISHSHCTAGWFSDLFLECFFLLRSTREF 304
           S  L++     ++  K  + LT +T I+++     W ++   EC  +L ST+ +
Sbjct: 698 SLVLLYTATNNHEGLKELSQLTKSTKINNTAFICSWLTNQPAECVNILTSTQRY 751


>SPCC584.04 |sup35|erf3|translation release factor eRF3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 662

 Score = 26.2 bits (55), Expect = 2.3
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = -3

Query: 106 KNCVNRISLFQVQVTKYNSN*ARQFQTLSLY 14
           K CV+++S+F  +V  YNS    ++  +S Y
Sbjct: 399 KECVDKLSMFLRRVAGYNSKTDVKYMPVSAY 429


>SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1213

 Score = 25.8 bits (54), Expect = 3.1
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = -2

Query: 443 WTSLTVPLIPSFTHVNLAAIMNQ 375
           WT +  PLI + TH  + ++++Q
Sbjct: 489 WTLVNAPLITNLTHETITSLLDQ 511


>SPAC27D7.12c |but1|SPAC27D7.12, mug107|neddylation pathway protein
           But1 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 243

 Score = 24.6 bits (51), Expect = 7.1
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +3

Query: 156 CLTRIRVTRKRKGITDSRPTPGSH 227
           C  R++ T+KR+  T    T G H
Sbjct: 23  CTLRVKSTKKRRSSTKDEETRGMH 46


>SPAC17G8.11c |||mannosyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 356

 Score = 24.6 bits (51), Expect = 7.1
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = +3

Query: 249 GFLTYFLNVFFFYG 290
           GFLT+F+ V+F +G
Sbjct: 276 GFLTFFIVVYFIFG 289


>SPAC19A8.10 |rfp1|mug140|ubiquitin-protein ligase E3
           Rfp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 254

 Score = 24.6 bits (51), Expect = 7.1
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -1

Query: 321 PLTKTRNSRVLRKRKKHSRNKSENH 247
           P+   R  R+ R+R + SRN   NH
Sbjct: 49  PVLSPRRRRMNRRRNERSRNFPSNH 73


>SPAC513.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 100

 Score = 24.6 bits (51), Expect = 7.1
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -1

Query: 447 VLDKLNCSSHPFLYPCKSRGHNEPI 373
           VLD  N  +H FLY C+  G  + +
Sbjct: 73  VLDDANNHNHAFLYHCQYLGQKKHV 97


>SPBC2F12.08c |ceg1|pce1|mRNA guanylyltransferase
           Ceg1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 402

 Score = 24.2 bits (50), Expect = 9.4
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -1

Query: 153 KQVLMAFAKYNYFVCKKIVSIGYHCFKF 70
           K+ L A  + NYFVC+K  S G  C  +
Sbjct: 51  KKHLQALKEKNYFVCEK--SDGIRCLLY 76


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,830,560
Number of Sequences: 5004
Number of extensions: 36180
Number of successful extensions: 73
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 73
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 166231220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)