Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_B20
         (450 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0162 + 13464698-13464974,13465719-13465837,13465920-134665...    28   4.0  
02_01_0592 - 4390493-4390702,4391581-4391748,4392496-4392660,439...    27   7.0  

>08_02_0162 +
           13464698-13464974,13465719-13465837,13465920-13466579,
           13466686-13466763,13466849-13466938,13467241-13467378,
           13467730-13467738
          Length = 456

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
 Frame = -2

Query: 362 LPGRSLANRSSSVCR*QKPETRECSVK---EKNIQEISQK 252
           L G+   ++   VCR QK   RE  +K   EKNI+E + K
Sbjct: 278 LNGKKFDDKEWYVCRAQKKSEREMELKEKFEKNIKEAADK 317


>02_01_0592 -
           4390493-4390702,4391581-4391748,4392496-4392660,
           4393113-4393469
          Length = 299

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +1

Query: 298 RVSGFC*RHTLLLLLASERPGSARCYWFIMAARFTWVKE 414
           R+ G C  H +L      R G AR  W I   + T+V++
Sbjct: 110 RILGICFGHQVLCRALGGRIGKARSGWNIGVKKMTFVRD 148


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,350,521
Number of Sequences: 37544
Number of extensions: 217933
Number of successful extensions: 454
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 448
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 454
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 871620292
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)