Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_B20
         (450 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex det...    23   1.2  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   2.7  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    22   3.6  
X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2 protein.    21   8.2  
EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2 prot...    21   8.2  
AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2 prot...    21   8.2  

>DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 23.4 bits (48), Expect = 1.2
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = +2

Query: 134 NAISTCLMFNQDKGYKKKKRYN 199
           N IS    +N D  Y KK  YN
Sbjct: 88  NYISNISNYNNDNNYNKKLYYN 109


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.2 bits (45), Expect = 2.7
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = -2

Query: 254 KTTQRYSASVRSRCWP*VSYTFSFSCNPYPG 162
           ++++  +A    R +P     FS SC+P PG
Sbjct: 58  RSSESLTAQAHHRLYP----AFSSSCDPVPG 84


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 21.8 bits (44), Expect = 3.6
 Identities = 12/46 (26%), Positives = 17/46 (36%)
 Frame = +2

Query: 215 TWISHSHCTAGWFSDLFLECFFLLRSTREFRVFVNGTHYYSYWLAS 352
           +W+       G    L L    L R  +    F NG H Y + + S
Sbjct: 60  SWVDRRLAFQGGKETLALSISMLARIWKPDTYFYNGKHSYLHTITS 105


>X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2 protein.
          Length = 162

 Score = 20.6 bits (41), Expect = 8.2
 Identities = 5/18 (27%), Positives = 10/18 (55%)
 Frame = -1

Query: 276 KHSRNKSENHPAVQCECE 223
           KH    + +H  + C+C+
Sbjct: 75  KHGLTNTASHTRLSCDCD 92


>EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2
           protein.
          Length = 167

 Score = 20.6 bits (41), Expect = 8.2
 Identities = 5/18 (27%), Positives = 10/18 (55%)
 Frame = -1

Query: 276 KHSRNKSENHPAVQCECE 223
           KH    + +H  + C+C+
Sbjct: 80  KHGLTNTASHTRLSCDCD 97


>AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2
           protein.
          Length = 167

 Score = 20.6 bits (41), Expect = 8.2
 Identities = 5/18 (27%), Positives = 10/18 (55%)
 Frame = -1

Query: 276 KHSRNKSENHPAVQCECE 223
           KH    + +H  + C+C+
Sbjct: 80  KHGLTNTASHTRLSCDCD 97


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 128,486
Number of Sequences: 438
Number of extensions: 3091
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11820384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)