Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0007_B17
(542 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC839.13c |rpl1601||60S ribosomal protein L13/L16|Schizosaccha... 170 1e-43
SPAC23A1.11 |rpl1602|rpl16-2|60S ribosomal protein L13/L16|Schiz... 167 7e-43
SPBC2G2.05 |rpl1603|rpl16c|60S ribosomal protein L13/L16|Schizos... 157 1e-39
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb... 29 0.34
SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces po... 27 1.4
SPCC663.05c |cia1||histone chaperone Cia1|Schizosaccharomyces po... 27 1.8
SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces pombe... 26 4.1
SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subu... 25 9.5
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 25 9.5
SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr... 25 9.5
>SPBC839.13c |rpl1601||60S ribosomal protein
L13/L16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 197
Score = 170 bits (413), Expect = 1e-43
Identities = 83/156 (53%), Positives = 102/156 (65%)
Frame = -2
Query: 541 NFFRNKLKFMSFLRKRCNVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTY 362
+FFRNKLK++++LRK C NP+RG FHFRAPS+I K VRGM+PHKT RG+ AL L+
Sbjct: 47 HFFRNKLKYLAYLRKACRYNPSRGAFHFRAPSRIFQKAVRGMLPHKTARGQAALEHLQAV 106
Query: 361 DGCPPPFDNXXXXXXXXXXXVFCLKPGRKYCHVGRLSHEVGWKYRDVVRKLEDKRKVKAI 182
+G PPPFD V LKPGRKYC VGRLS EVGWKY D+V KLE++RKVK+
Sbjct: 107 EGIPPPFDKQKRVVVPAALRVLRLKPGRKYCTVGRLSSEVGWKYNDIVAKLEERRKVKSA 166
Query: 181 KLISYERKLKKITKEAGEKVAKATAPFTTVVQSYGY 74
Y+ KL K K A AK +P + +GY
Sbjct: 167 AF--YQAKLAKQKKIAS---AKEASPVNQKLSQFGY 197
>SPAC23A1.11 |rpl1602|rpl16-2|60S ribosomal protein
L13/L16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 197
Score = 167 bits (407), Expect = 7e-43
Identities = 80/143 (55%), Positives = 97/143 (67%)
Frame = -2
Query: 541 NFFRNKLKFMSFLRKRCNVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTY 362
+FFRNKLK++++LRK C NP+RG FHFRAPS+I K VRGM+PHKT RG+ AL L+
Sbjct: 47 HFFRNKLKYLAYLRKACRYNPSRGAFHFRAPSRIFQKAVRGMLPHKTARGQAALEHLQAV 106
Query: 361 DGCPPPFDNXXXXXXXXXXXVFCLKPGRKYCHVGRLSHEVGWKYRDVVRKLEDKRKVKAI 182
+G PPPFD V LKPGRKYC VGRLS EVGWKY D+V KLE++RKVK+
Sbjct: 107 EGIPPPFDKQKRVVVPAALRVLRLKPGRKYCTVGRLSSEVGWKYSDIVSKLEERRKVKSA 166
Query: 181 KLISYERKLKKITKEAGEKVAKA 113
Y+ KL K K A K A +
Sbjct: 167 AF--YQAKLAKQKKIASAKAASS 187
>SPBC2G2.05 |rpl1603|rpl16c|60S ribosomal protein
L13/L16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 197
Score = 157 bits (380), Expect = 1e-39
Identities = 68/119 (57%), Positives = 87/119 (73%)
Frame = -2
Query: 541 NFFRNKLKFMSFLRKRCNVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTY 362
+FFRNKLK++++LRK C NP+RG FHFRAPS+I K VRGM+PHKT RG AL+ L+
Sbjct: 47 HFFRNKLKYLAYLRKACRYNPSRGAFHFRAPSRIFTKAVRGMLPHKTTRGNIALKNLQAL 106
Query: 361 DGCPPPFDNXXXXXXXXXXXVFCLKPGRKYCHVGRLSHEVGWKYRDVVRKLEDKRKVKA 185
+G PPPFD V LKP RKYC +GRLS EVGWKY+++V KLE++RK+K+
Sbjct: 107 EGIPPPFDKQKRLVVPAALRVLRLKPSRKYCTIGRLSSEVGWKYKNIVSKLEERRKIKS 165
>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 29.5 bits (63), Expect = 0.34
Identities = 13/44 (29%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = -2
Query: 205 DKRKVKAIKLISYERKLKKITKEAGEKVAKATA-PFTTVVQSYG 77
DKR+ I L++YE++L+ + K E + P ++++ YG
Sbjct: 18 DKRETIYIDLLNYEKQLRNLNKNTREDSLQTNLNPLLSLIKKYG 61
>SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 474
Score = 27.5 bits (58), Expect = 1.4
Identities = 18/45 (40%), Positives = 22/45 (48%)
Frame = -2
Query: 259 RLSHEVGWKYRDVVRKLEDKRKVKAIKLISYERKLKKITKEAGEK 125
R S E K D K E+KR+ K K E+K KK KE +K
Sbjct: 428 RKSVESSEKDEDEAAKKEEKRRKKEAKKEKKEKKEKKEKKEKKKK 472
>SPCC663.05c |cia1||histone chaperone Cia1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 262
Score = 27.1 bits (57), Expect = 1.8
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = -1
Query: 200 EESEGHQADIL*EETQENHQGSRREGGESDG 108
EE E +AD + EE E +G E E DG
Sbjct: 176 EEEEEEEADEMEEEFDEEGEGDEEEEEEDDG 206
>SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 882
Score = 25.8 bits (54), Expect = 4.1
Identities = 17/46 (36%), Positives = 20/46 (43%), Gaps = 3/46 (6%)
Frame = +3
Query: 231 YFHPTS-CERRPT*QYLRPGFRQNTRSAA--GTTTRRLLSNGGGQP 359
YF P C R P Y PGF + + AA G T S G+P
Sbjct: 219 YFTPGKHCPRLPVRVYTTPGFSEQGKFAAELGAKTLDFFSGVFGEP 264
>SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1405
Score = 24.6 bits (51), Expect = 9.5
Identities = 11/39 (28%), Positives = 19/39 (48%)
Frame = -2
Query: 529 NKLKFMSFLRKRCNVNPARGPFHFRAPSKILWKTVRGMI 413
N+ + MS KRC RG HF + L+ ++ ++
Sbjct: 1323 NRTRQMSVYGKRCCNKSCRGSVHFEYNDEQLYNQIKFLL 1361
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 24.6 bits (51), Expect = 9.5
Identities = 10/18 (55%), Positives = 15/18 (83%)
Frame = -2
Query: 160 KLKKITKEAGEKVAKATA 107
K KKITKEA +++AK ++
Sbjct: 28 KSKKITKEAAKEIAKQSS 45
>SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 872
Score = 24.6 bits (51), Expect = 9.5
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +2
Query: 236 PSDFVRETSHMTVFTARLQTEYT 304
PSDF+R S +V T+ L+T T
Sbjct: 631 PSDFIRLNSEESVGTSSLRTSQT 653
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,172,228
Number of Sequences: 5004
Number of extensions: 45031
Number of successful extensions: 142
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 223909422
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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