Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0007_B17
(542 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0010 + 30990002-30990273,30990372-30990488,30990581-309906... 156 9e-39
07_01_0071 - 522920-523063,524125-524212,524289-524677 155 3e-38
03_06_0007 - 30975910-30975921,30976660-30976747,30976850-309769... 113 7e-26
11_04_0056 + 12942802-12942920,12943022-12943115 61 5e-10
07_01_0444 + 3357048-3357425,3357841-3357969,3358165-3358284,335... 31 0.59
05_03_0238 - 10783451-10783735,10784686-10785762 29 1.8
01_06_0707 + 31355929-31356244,31356766-31356992,31357081-313572... 29 1.8
05_05_0082 + 22252993-22255617 29 2.4
08_01_0033 + 244930-245105,245297-245344,245835-246539,246652-24... 28 4.2
05_04_0347 + 20479682-20479753,20480136-20480813,20481143-204821... 28 4.2
09_04_0613 + 18953761-18953932,18954672-18954799,18954885-189549... 27 7.3
>03_06_0010 +
30990002-30990273,30990372-30990488,30990581-30990668,
30991505-30991648
Length = 206
Score = 156 bits (379), Expect = 9e-39
Identities = 72/139 (51%), Positives = 95/139 (68%)
Frame = -2
Query: 532 RNKLKFMSFLRKRCNVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGC 353
R K+K++ FLRKR N P+ GP HFR+P+KILW+TVRGMIPHKT+RG+ AL RL+ Y+G
Sbjct: 54 RQKMKYLRFLRKRMNTKPSHGPIHFRSPAKILWRTVRGMIPHKTKRGEAALARLKAYEGV 113
Query: 352 PPPFDNXXXXXXXXXXXVFCLKPGRKYCHVGRLSHEVGWKYRDVVRKLEDKRKVKAIKLI 173
PPP+D V L+PG KYC +G+LS EVGW Y D +R+LE+KRK KA
Sbjct: 114 PPPYDRTKRMVIPDALKVLRLQPGHKYCLLGQLSKEVGWNYYDTIRELEEKRKEKAKVAY 173
Query: 172 SYERKLKKITKEAGEKVAK 116
++L K+ +A EK A+
Sbjct: 174 DRRKQLAKLRVKA-EKAAE 191
>07_01_0071 - 522920-523063,524125-524212,524289-524677
Length = 206
Score = 155 bits (375), Expect = 3e-38
Identities = 70/131 (53%), Positives = 92/131 (70%)
Frame = -2
Query: 532 RNKLKFMSFLRKRCNVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGC 353
R K+K++ FLRKR N P+ GP HFRAPS+I W+TVRGMIPHKT RG+ AL L+ +DG
Sbjct: 54 RQKMKYLRFLRKRMNTKPSHGPIHFRAPSRIFWRTVRGMIPHKTPRGEAALANLKAFDGV 113
Query: 352 PPPFDNXXXXXXXXXXXVFCLKPGRKYCHVGRLSHEVGWKYRDVVRKLEDKRKVKAIKLI 173
PPP+D V L+PG KYC +G+LS EVGW Y D +R+LE+KRK KA +
Sbjct: 114 PPPYDRTKRMVVPDALKVLRLQPGHKYCLLGQLSKEVGWNYHDTIRELEEKRKEKA--KV 171
Query: 172 SYERKLKKITK 140
+YER+ K++T+
Sbjct: 172 AYERR-KQLTR 181
>03_06_0007 -
30975910-30975921,30976660-30976747,30976850-30976966,
30977081-30977154
Length = 96
Score = 113 bits (273), Expect = 7e-26
Identities = 49/92 (53%), Positives = 62/92 (67%)
Frame = -2
Query: 490 NVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXXX 311
N P+ GP HFR+P+KILW+TVRGMIPHKT+RG+ AL RL+ Y+ PP+D
Sbjct: 2 NTKPSHGPIHFRSPAKILWRTVRGMIPHKTKRGEAALARLKAYEVVTPPYDRTKRMVIPD 61
Query: 310 XXXVFCLKPGRKYCHVGRLSHEVGWKYRDVVR 215
V L+PG KYC +G+LS EVGW Y D +R
Sbjct: 62 ALKVLRLQPGHKYCLLGQLSKEVGWNYYDTIR 93
>11_04_0056 + 12942802-12942920,12943022-12943115
Length = 70
Score = 61.3 bits (142), Expect = 5e-10
Identities = 27/56 (48%), Positives = 34/56 (60%)
Frame = -2
Query: 397 RGKNALRRLRTYDGCPPPFDNXXXXXXXXXXXVFCLKPGRKYCHVGRLSHEVGWKY 230
RG+ AL RL+ Y+G PPP+D V L+PG KYC +G+LS EVGW Y
Sbjct: 9 RGEAALARLKAYEGVPPPYDRTKRMVIPDALKVLRLQPGHKYCLLGQLSKEVGWNY 64
>07_01_0444 +
3357048-3357425,3357841-3357969,3358165-3358284,
3358661-3358753,3358935-3359014,3359180-3359293,
3359530-3359603,3359757-3359833,3360558-3360641,
3360732-3360824,3360901-3361008,3361130-3361204,
3361507-3361911
Length = 609
Score = 31.1 bits (67), Expect = 0.59
Identities = 19/45 (42%), Positives = 29/45 (64%)
Frame = -2
Query: 247 EVGWKYRDVVRKLEDKRKVKAIKLISYERKLKKITKEAGEKVAKA 113
+VG + R RK E+K+KVKA K + + K+ K K+ +K+AKA
Sbjct: 562 KVGPEERKAARK-ENKKKVKAEKREARKDKIPKAEKKKRKKMAKA 605
>05_03_0238 - 10783451-10783735,10784686-10785762
Length = 453
Score = 29.5 bits (63), Expect = 1.8
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = -2
Query: 259 RLSHEVGWKYRDVVRKLEDKRKVKAIKLISYERKLKKITKEAGE 128
+L +E+ RD+ ++ EDK IK+ + E K K+ K E
Sbjct: 177 KLGNEIDKTRRDITKQFEDKGNKLEIKMKALEGKTDKLDKSLAE 220
>01_06_0707 +
31355929-31356244,31356766-31356992,31357081-31357257,
31357355-31357510,31357778-31358054,31358192-31358306,
31360349-31360634,31361196-31361381,31361663-31361833,
31362307-31362426
Length = 676
Score = 29.5 bits (63), Expect = 1.8
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = -2
Query: 457 RAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFD 338
R P +I+ VRGM+P K G+ L+ Y G P +
Sbjct: 619 RIPERIIEHAVRGMLP-KGRLGRRLFTHLKVYKGAEHPHE 657
>05_05_0082 + 22252993-22255617
Length = 874
Score = 29.1 bits (62), Expect = 2.4
Identities = 13/17 (76%), Positives = 13/17 (76%)
Frame = -2
Query: 238 WKYRDVVRKLEDKRKVK 188
WK RD VRKL D RKVK
Sbjct: 721 WKERDEVRKLMDYRKVK 737
>08_01_0033 + 244930-245105,245297-245344,245835-246539,246652-246796,
246893-247240,247882-248721,248786-248832,249470-249596,
249672-249836,249973-251370,251453-251713,251802-252161
Length = 1539
Score = 28.3 bits (60), Expect = 4.2
Identities = 20/68 (29%), Positives = 37/68 (54%), Gaps = 3/68 (4%)
Frame = -2
Query: 247 EVGWKYRDVVRKLEDKRKVKAIKLISYERKLKKITK--EAG-EKVAKATAPFTTVVQSYG 77
++ W Y+D++ ++L ++R+L ++TK AG E+V PF TVV++
Sbjct: 889 DINWSYQDLL-----------LELYLWDRRLDQLTKCVSAGQERVVSCKDPFDTVVKNIR 937
Query: 76 YN*D*EDK 53
N + E+K
Sbjct: 938 VNQEIENK 945
>05_04_0347 +
20479682-20479753,20480136-20480813,20481143-20482195,
20482345-20482406,20482491-20482541,20482635-20482719,
20483253-20483342,20483472-20483563,20483704-20483728
Length = 735
Score = 28.3 bits (60), Expect = 4.2
Identities = 16/49 (32%), Positives = 21/49 (42%)
Frame = -2
Query: 490 NVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPP 344
NV R P FR P+K + +T R I R ++T PPP
Sbjct: 652 NVRANRVPESFRKPNKGIQETARSQISSSKSATPAQTRSIKTRAPNPPP 700
>09_04_0613 +
18953761-18953932,18954672-18954799,18954885-18954956,
18955033-18955146,18955547-18955615,18955691-18955747,
18956262-18956315,18956387-18956449,18956543-18956605,
18956803-18956967,18957111-18957266,18957315-18957416
Length = 404
Score = 27.5 bits (58), Expect = 7.3
Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Frame = -2
Query: 193 VKAIKLIS-YERKLKKITKEAGEKVAKATAPFTTVVQSY 80
VKA K+ Y ++ KK++K ++VAKAT P ++ Y
Sbjct: 308 VKAHKIADPYFQEAKKVSKPYIDQVAKATKPHVEKIRIY 346
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,426,425
Number of Sequences: 37544
Number of extensions: 311350
Number of successful extensions: 847
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 811
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 842
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1210221432
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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