Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_B17
         (542 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z46381-2|CAA86515.1|  202|Caenorhabditis elegans Hypothetical pr...   183   8e-47
U31528-1|AAA74904.1|  202|Caenorhabditis elegans 60S ribosomal p...   183   8e-47
AF038614-7|AAB92060.2|  664|Caenorhabditis elegans Hypothetical ...    31   0.41 
Z68337-4|CAA92744.1|  364|Caenorhabditis elegans Hypothetical pr...    29   2.9  
AF101318-5|AAC69347.1|  574|Caenorhabditis elegans Hypothetical ...    28   5.0  
U28738-2|AAA68309.4|  982|Caenorhabditis elegans Hypothetical pr...    27   6.6  

>Z46381-2|CAA86515.1|  202|Caenorhabditis elegans Hypothetical
           protein M01F1.2 protein.
          Length = 202

 Score =  183 bits (445), Expect = 8e-47
 Identities = 81/157 (51%), Positives = 106/157 (67%)
 Frame = -2

Query: 541 NFFRNKLKFMSFLRKRCNVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTY 362
           NF R+KLK+MSFLRKRCN+NPARG FH+RAP KI W+TVRGM+PHKT RG  AL+ LR Y
Sbjct: 47  NFHRSKLKYMSFLRKRCNINPARGAFHYRAPGKIFWRTVRGMLPHKTNRGNEALKNLRAY 106

Query: 361 DGCPPPFDNXXXXXXXXXXXVFCLKPGRKYCHVGRLSHEVGWKYRDVVRKLEDKRKVKAI 182
           +G P  +              F L+P RK+C VGRLSHEVGW+++DVV KLE KRKVK  
Sbjct: 107 EGVPAKYQK-TKSLHAPSASRFRLQPRRKFCVVGRLSHEVGWQFQDVVAKLEAKRKVKGA 165

Query: 181 KLISYERKLKKITKEAGEKVAKATAPFTTVVQSYGYN 71
                ++K+ K+  +A +  A   A +  ++++ GYN
Sbjct: 166 AYFEQKKKMDKLAVQAKKNAAPKIAQYQKIIEALGYN 202


>U31528-1|AAA74904.1|  202|Caenorhabditis elegans 60S ribosomal
           protein L13A protein.
          Length = 202

 Score =  183 bits (445), Expect = 8e-47
 Identities = 81/157 (51%), Positives = 106/157 (67%)
 Frame = -2

Query: 541 NFFRNKLKFMSFLRKRCNVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTY 362
           NF R+KLK+MSFLRKRCN+NPARG FH+RAP KI W+TVRGM+PHKT RG  AL+ LR Y
Sbjct: 47  NFHRSKLKYMSFLRKRCNINPARGAFHYRAPGKIFWRTVRGMLPHKTNRGNEALKNLRAY 106

Query: 361 DGCPPPFDNXXXXXXXXXXXVFCLKPGRKYCHVGRLSHEVGWKYRDVVRKLEDKRKVKAI 182
           +G P  +              F L+P RK+C VGRLSHEVGW+++DVV KLE KRKVK  
Sbjct: 107 EGVPAKYQK-TKSLHAPSASRFRLQPRRKFCVVGRLSHEVGWQFQDVVAKLEAKRKVKGA 165

Query: 181 KLISYERKLKKITKEAGEKVAKATAPFTTVVQSYGYN 71
                ++K+ K+  +A +  A   A +  ++++ GYN
Sbjct: 166 AYFEQKKKMDKLAVQAKKNAAPKIAQYQKIIEALGYN 202


>AF038614-7|AAB92060.2|  664|Caenorhabditis elegans Hypothetical
           protein F15E6.9 protein.
          Length = 664

 Score = 31.5 bits (68), Expect = 0.41
 Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
 Frame = -2

Query: 274 YCHVGRLS--HEVGWKYRDVVRKLEDKRKVKAIKL-ISYERKLKKITKEAGEKVAK 116
           YC  G+ S  H + WKYRD V  ++ K K+ AI+L  + E K   I  +  +KV +
Sbjct: 285 YC-TGKTSILHRIQWKYRDAV-IVQAKEKMSAIELRRAIEAKTNVILHDVEQKVVR 338


>Z68337-4|CAA92744.1|  364|Caenorhabditis elegans Hypothetical
           protein M7.7 protein.
          Length = 364

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 15/71 (21%), Positives = 31/71 (43%), Gaps = 2/71 (2%)
 Frame = -2

Query: 277 KYCHVGRLSHEVGWKYRDV--VRKLEDKRKVKAIKLISYERKLKKITKEAGEKVAKATAP 104
           K+    ++ H +GW +RDV       D +  + + L+ +      + K+   K  + +AP
Sbjct: 133 KFIEALQMMHSIGWLHRDVKPANVCVDLKSRRHLYLLDFGMSKIYVEKDGTLKARRTSAP 192

Query: 103 FTTVVQSYGYN 71
           F   ++    N
Sbjct: 193 FRGTLRYVSVN 203


>AF101318-5|AAC69347.1|  574|Caenorhabditis elegans Hypothetical
           protein Y73C8C.7 protein.
          Length = 574

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 17/44 (38%), Positives = 26/44 (59%)
 Frame = -2

Query: 235 KYRDVVRKLEDKRKVKAIKLISYERKLKKITKEAGEKVAKATAP 104
           K  +V +  E+K   K  +LI +ER+++  TKEA E+  K  AP
Sbjct: 456 KLIEVSQNRENKLIAKR-ELIYFERQIRGYTKEAYEETFKEKAP 498


>U28738-2|AAA68309.4|  982|Caenorhabditis elegans Hypothetical
           protein T28D9.7 protein.
          Length = 982

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 15/40 (37%), Positives = 20/40 (50%)
 Frame = -1

Query: 203 QEESEGHQADIL*EETQENHQGSRREGGESDGAVYNSRPI 84
           +E+ E  + D+  EE  EN   S   GGE+      SRPI
Sbjct: 436 EEQEEDDEDDVEQEELDENVSFSTVSGGETFSCEDKSRPI 475


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,164,668
Number of Sequences: 27780
Number of extensions: 260080
Number of successful extensions: 696
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 640
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 693
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1091917214
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)