Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_B16
         (546 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H1.04c |mdm31||mitochondrial inner membrane protein Mdm31|S...    28   1.0  
SPAC23H3.02c |ini1||RING finger-like protein Ini1|Schizosaccharo...    26   4.2  
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc...    25   7.3  

>SPAC3H1.04c |mdm31||mitochondrial inner membrane protein
           Mdm31|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 27.9 bits (59), Expect = 1.0
 Identities = 15/32 (46%), Positives = 19/32 (59%)
 Frame = -3

Query: 523 CVLMYARKQLYFFDVIIEKTKTLTGNFRVSFF 428
           C L   RKQ  F+D++    KTLTG+F  S F
Sbjct: 350 CELPRLRKQWLFYDLM--NAKTLTGSFDNSMF 379


>SPAC23H3.02c |ini1||RING finger-like protein
           Ini1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 117

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -3

Query: 442 RVSFFRDGCARIMKIYSHHVSLTCEKKYNFKN 347
           R+ + RDGC R++ + S       E+K  FKN
Sbjct: 77  RMEYDRDGCPRVINLGSSRTDWFYERK-KFKN 107


>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 529

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
 Frame = -3

Query: 154 IR*KLNISAPIDMCRIENVR*IVLVHWYNLWSVARGV---PNNMRYSTKLV 11
           IR  L    PID  +I   R I  VH+ N+ +  + V   P N ++S + +
Sbjct: 222 IREDLEPFGPIDQIKIVTERNIAFVHFLNIAAAIKAVQELPLNPKWSKRRI 272


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,041,803
Number of Sequences: 5004
Number of extensions: 38232
Number of successful extensions: 84
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 225926624
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)