Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_B16
         (546 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81115-3|CAB03293.2|  486|Caenorhabditis elegans Hypothetical pr...    28   5.0  
U40945-1|AAA81719.2|  656|Caenorhabditis elegans Hypothetical pr...    27   6.7  

>Z81115-3|CAB03293.2|  486|Caenorhabditis elegans Hypothetical
           protein T05D4.3 protein.
          Length = 486

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 12/47 (25%), Positives = 25/47 (53%)
 Frame = +3

Query: 45  TPLATLHKLYQCTSTIQRTFSILHISIGAEIFSFYRIIENVHVEISN 185
           T + T+  +Y    TIQ++ + + +S+G  +FS    +  V +  +N
Sbjct: 287 TLVVTVFNIYLMRKTIQKSLTAISVSLGTVLFSLSTTVIGVFMAQTN 333


>U40945-1|AAA81719.2|  656|Caenorhabditis elegans Hypothetical
           protein F10D7.1 protein.
          Length = 656

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 23/96 (23%), Positives = 36/96 (37%), Gaps = 3/96 (3%)
 Frame = -3

Query: 535 LKKKCVLMYARKQLYFFDVIIEKTKTLTGNFRVSFF-RDGCA--RIMKIYSHHVSLTCEK 365
           +K   +L YA     +  +       L      +FF R+GC    I +      SL C  
Sbjct: 130 VKLTVILAYAIPMSIYLAIFTIFPGGLRAPIAFAFFNREGCMGNAIYRNNFFRASLVCPF 189

Query: 364 KYNFKNILDYYVHYYIHINKSFNTPLCENNSSLSKN 257
            +    +   Y+H  IH+ K    PL  N ++   N
Sbjct: 190 IFFIFMLSFLYMHIVIHMRKISRDPLLNNKNNRRNN 225


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,101,497
Number of Sequences: 27780
Number of extensions: 208729
Number of successful extensions: 501
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 494
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 501
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1102518352
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)