Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_B16
         (546 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       29   0.041
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    23   2.7  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    23   2.7  

>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 28.7 bits (61), Expect = 0.041
 Identities = 12/35 (34%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
 Frame = +2

Query: 23  TIPHIVWYSSCYTP*IIPVYKHNSAH-IFNSTHIY 124
           T P++ WYS C T    P Y H   + +F    +Y
Sbjct: 179 THPNVTWYSQCVTFNAFPTYTHEITYSLFGMIMMY 213


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = -1

Query: 198 FKTNHSKSQHEHFQ*FDKN 142
           F  NH+  QHE FQ   KN
Sbjct: 120 FVPNHTSDQHEWFQLSLKN 138



 Score = 22.2 bits (45), Expect = 3.5
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = -3

Query: 406 MKIYSHHVSLTCEKKYNFKNILDYY 332
           +KIY+H +  T      F+++LD +
Sbjct: 253 LKIYTHDIPETYNVVRKFRDVLDEF 277


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = -1

Query: 198 FKTNHSKSQHEHFQ*FDKN 142
           F  NH+  QHE FQ   KN
Sbjct: 120 FVPNHTSDQHEWFQLSLKN 138



 Score = 22.2 bits (45), Expect = 3.5
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = -3

Query: 406 MKIYSHHVSLTCEKKYNFKNILDYY 332
           +KIY+H +  T      F+++LD +
Sbjct: 253 LKIYTHDIPETYNVVRKFRDVLDEF 277


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 137,177
Number of Sequences: 438
Number of extensions: 3053
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15581757
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)