Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0007_B15
(573 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 77 1e-15
SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity... 62 6e-11
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 54 1e-08
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce... 52 5e-08
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 48 7e-07
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 48 1e-06
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces... 48 1e-06
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 47 2e-06
SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 46 5e-06
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce... 44 1e-05
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 42 8e-05
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 42 8e-05
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 41 1e-04
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei... 41 1e-04
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 40 2e-04
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos... 40 2e-04
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 39 5e-04
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 39 6e-04
SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|ch... 37 0.002
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc... 36 0.003
SPCC1827.05c |||nucleolar RNA-binding protein NIFK |Schizosaccha... 36 0.003
SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual 36 0.004
SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc... 36 0.004
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 35 0.010
SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 35 0.010
SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 33 0.039
SPBC13A2.01c |||nuclear cap-binding complex small subunit|Schizo... 33 0.039
SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding p... 31 0.091
SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces... 31 0.12
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 30 0.21
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 30 0.28
SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces ... 30 0.28
SPCC306.04c |set1||histone lysine methyltransferase Set1|Schizos... 28 0.84
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy... 27 1.5
SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces po... 27 2.0
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo... 27 2.6
SPAC637.03 |||conserved fungal protein|Schizosaccharomyces pombe... 26 3.4
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 25 6.0
SPBC21B10.06c |||sequence orphan|Schizosaccharomyces pombe|chr 2... 25 6.0
SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyc... 25 6.0
SPCC584.13 |||amino acid permease, unknown 14|Schizosaccharomyce... 25 7.9
SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces... 25 7.9
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 77.4 bits (182), Expect = 1e-15
Identities = 50/152 (32%), Positives = 74/152 (48%), Gaps = 1/152 (0%)
Frame = +2
Query: 92 DKNFAFLEFRSIDETTQAMAFDGINFKGQS-LKIRRPHDYQPMPGTENPAINVPAGVIST 268
++NFA LE + ++ T ++ LK +R +Y T +
Sbjct: 244 EENFAILEVATPEDATFLWGLQSESYSNDVFLKFQRIQNYIVPQITPEVSQKRSDDYAKN 303
Query: 269 VVPDSPHKIFIGGLPNYLNEDQVKELLMSFGQLRAFNLVKDSSTGLSKGYAFAEYVDISM 448
V DS KI+I LP L EDQV ELL FG L +F L+K+ + G SKG+ F E+ + S
Sbjct: 304 DVLDSKDKIYISNLPLNLGEDQVVELLKPFGDLLSFQLIKNIADGSSKGFCFCEFKNPSD 363
Query: 449 TDQAIAGLNGMQLGDQKLIVQRASIGAKNSTL 544
+ AI+GL+G KL Q A +G + +
Sbjct: 364 AEVAISGLDGKDTYGNKLHAQFACVGLNQAMI 395
>SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity
factor complex subunit Ctf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 363
Score = 62.1 bits (144), Expect = 6e-11
Identities = 27/73 (36%), Positives = 42/73 (57%)
Frame = +2
Query: 293 IFIGGLPNYLNEDQVKELLMSFGQLRAFNLVKDSSTGLSKGYAFAEYVDISMTDQAIAGL 472
+F+G +P ++E Q+ E+ G ++ F LV D TG KGY F E+ D T A+ L
Sbjct: 9 VFVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEFFDSETTAMAVRKL 68
Query: 473 NGMQLGDQKLIVQ 511
N +LG +K+ V+
Sbjct: 69 NNSELGPRKIRVE 81
>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 422
Score = 54.0 bits (124), Expect = 1e-08
Identities = 24/72 (33%), Positives = 40/72 (55%)
Frame = +2
Query: 293 IFIGGLPNYLNEDQVKELLMSFGQLRAFNLVKDSSTGLSKGYAFAEYVDISMTDQAIAGL 472
+++G +P + E+QV ++ G +++F LV D +G KGY F EY D + A+ L
Sbjct: 7 VYVGNIPYEMAEEQVIDIFKQSGPVKSFQLVIDPESGQPKGYGFCEYHDPATAASAVRNL 66
Query: 473 NGMQLGDQKLIV 508
N G ++L V
Sbjct: 67 NNYDAGTRRLRV 78
>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 52.4 bits (120), Expect = 5e-08
Identities = 28/76 (36%), Positives = 42/76 (55%)
Frame = +2
Query: 293 IFIGGLPNYLNEDQVKELLMSFGQLRAFNLVKDSSTGLSKGYAFAEYVDISMTDQAIAGL 472
I+IG L LNED + + FG+ NLV+D TG SKG+AF +Y D T A+ +
Sbjct: 33 IYIGNLDFDLNEDDILCVFSEFGEPVDINLVRDKETGKSKGFAFLKYEDQRSTVLAVDNM 92
Query: 473 NGMQLGDQKLIVQRAS 520
++L D+ + V +
Sbjct: 93 TNVKLLDRLVRVDHVA 108
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 48.4 bits (110), Expect = 7e-07
Identities = 33/125 (26%), Positives = 59/125 (47%), Gaps = 5/125 (4%)
Frame = +2
Query: 209 QPMPGTENP-AINVPAGV---ISTVVPDSPHKIFIGGLPNYLNEDQVKELLMS-FGQLRA 373
+P+PGT + +N +G ++ S + IF+G L +NE V L S + ++
Sbjct: 156 KPIPGTNHLFKLNWASGGGLREKSISKASEYSIFVGDLSPNVNEFDVYSLFASRYNSCKS 215
Query: 374 FNLVKDSSTGLSKGYAFAEYVDISMTDQAIAGLNGMQLGDQKLIVQRASIGAKNSTLAMT 553
++ D T +S+GY F + D + A+A + G GD+ + V A+ +K +
Sbjct: 216 AKIMTDPQTNVSRGYGFVRFTDENDQKSALAEMQGQICGDRPIRVGLATPKSKAHVFSPV 275
Query: 554 GAAPV 568
PV
Sbjct: 276 NVVPV 280
Score = 39.5 bits (88), Expect = 3e-04
Identities = 38/169 (22%), Positives = 75/169 (44%), Gaps = 13/169 (7%)
Frame = +2
Query: 80 QINLDKNFAFLEFRSIDETTQAMA-FDGINFKGQSLKI------RRPHDYQPMPGTENPA 238
Q N+ + + F+ F ++ A+A G + +++ + H + P+ P
Sbjct: 223 QTNVSRGYGFVRFTDENDQKSALAEMQGQICGDRPIRVGLATPKSKAHVFSPVNVV--PV 280
Query: 239 INVPAGVISTVVP-----DSPHK-IFIGGLPNYLNEDQVKELLMSFGQLRAFNLVKDSST 400
P G S P D+ + +F+GGL +++E+++K L +FG++ +
Sbjct: 281 SMPPVGFYSAAQPVPQFADTANSTVFVGGLSKFVSEEELKYLFQNFGEIVYVKIPP---- 336
Query: 401 GLSKGYAFAEYVDISMTDQAIAGLNGMQLGDQKLIVQRASIGAKNSTLA 547
KG F ++V+ + AI L G LG+ ++ R S G + +A
Sbjct: 337 --GKGCGFVQFVNRQSAEIAINQLQGYPLGNSRI---RLSWGRNQNPIA 380
Score = 30.7 bits (66), Expect = 0.16
Identities = 16/68 (23%), Positives = 36/68 (52%), Gaps = 7/68 (10%)
Frame = +2
Query: 293 IFIGGLPNYLNEDQVKELLMSFGQLRAFNLVKDSSTGLSKGYAFAEYVD-------ISMT 451
+++G L ++ E ++++ + G+ L+++ TG++ GY F E+ +SM
Sbjct: 95 LWMGELEPWVTEAFIQQVWNTLGKAVKVKLIRNRYTGMNAGYCFVEFASPHEASSAMSMN 154
Query: 452 DQAIAGLN 475
++ I G N
Sbjct: 155 NKPIPGTN 162
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 48.0 bits (109), Expect = 1e-06
Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 2/80 (2%)
Frame = +2
Query: 284 PHKIFIGGLPNYL--NEDQVKELLMSFGQLRAFNLVKDSSTGLSKGYAFAEYVDISMTDQ 457
P +F+ L + + N Q++EL FG++++ L ST +SKGY F + Q
Sbjct: 418 PCNLFVKNLDDNIVGNTQQLEELFSKFGRIKSCTLASYPSTEISKGYGFVSFSHPFEAVQ 477
Query: 458 AIAGLNGMQLGDQKLIVQRA 517
AI LNG+ G ++L V A
Sbjct: 478 AINTLNGVLFGKKRLFVNYA 497
Score = 35.5 bits (78), Expect = 0.006
Identities = 26/83 (31%), Positives = 38/83 (45%), Gaps = 6/83 (7%)
Frame = +2
Query: 293 IFIGGLPNYLNEDQVKELLMSFGQLRAFNLV---KDSSTGLSKG---YAFAEYVDISMTD 454
I++G LP+ + EL FG F+++ K+ ST SK +AF + + D
Sbjct: 22 IYVGNLPSTCQSSDLHELFEPFGNFSKFHMLSRKKNKSTD-SKSPTLFAFITFENKCSAD 80
Query: 455 QAIAGLNGMQLGDQKLIVQRASI 523
AIA LNG L V+ I
Sbjct: 81 NAIASLNGSSFQGNTLKVEYTHI 103
>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 369
Score = 47.6 bits (108), Expect = 1e-06
Identities = 33/133 (24%), Positives = 60/133 (45%), Gaps = 1/133 (0%)
Frame = +2
Query: 92 DKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDYQPMPGTENPAINVPAGVISTV 271
+K FA+++F + D A+ G+++ I+ D+ P ++ A + S+
Sbjct: 164 NKGFAYVDFATEDALKLALQCSEKALNGRNILIKSNTDFSGRPSKPANTLSKTASIQSSK 223
Query: 272 VPDSPHKIFIGGLPNYLNEDQVKELLMSFGQLRAFNLVKDSSTGLSKGYAFAEYVDISMT 451
S +F+G L + +KE GQ+R L+ TG KG+ F ++ DI
Sbjct: 224 KEPSSI-LFVGNLDFETTDADLKEHFGQVGQIRRVRLMTFEDTGKCKGFGFVDFPDIDTC 282
Query: 452 DQAI-AGLNGMQL 487
+A+ G N +L
Sbjct: 283 MKAMELGHNSWRL 295
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 46.8 bits (106), Expect = 2e-06
Identities = 45/165 (27%), Positives = 70/165 (42%), Gaps = 2/165 (1%)
Frame = +2
Query: 32 HLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAM-AFDGINFKGQSLKIRRPHD- 205
+LS + +A +P + L F F+EF+ AM A +G G L+I+ H
Sbjct: 645 YLSAVIRAKPDPKRPGKY-LSMGFGFVEFKDKASAVAAMHAMNGFVLDGHKLEIKLSHQG 703
Query: 206 YQPMPGTENPAINVPAGVISTVVPDSPHKIFIGGLPNYLNEDQVKELLMSFGQLRAFNLV 385
+ P G KI I LP + V+ LL ++GQLR+ +
Sbjct: 704 VDAAAEVRKQDSSKPKGT----------KILIKNLPFEATKKDVQSLLGAYGQLRSVRVP 753
Query: 386 KDSSTGLSKGYAFAEYVDISMTDQAIAGLNGMQLGDQKLIVQRAS 520
K ++G+AFAE+V A+ L L + L++Q AS
Sbjct: 754 KKFDRS-ARGFAFAEFVTAREAANAMRALKNTHLLGRHLVLQYAS 797
Score = 34.3 bits (75), Expect = 0.013
Identities = 16/50 (32%), Positives = 26/50 (52%)
Frame = +2
Query: 290 KIFIGGLPNYLNEDQVKELLMSFGQLRAFNLVKDSSTGLSKGYAFAEYVD 439
++F+ L ED +K L FGQL ++ D T KG+A+ ++ D
Sbjct: 324 RLFLRNLTYSCAEDDLKSLFGPFGQLEQVHMPIDKKTNNPKGFAYIDFHD 373
>SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 121
Score = 45.6 bits (103), Expect = 5e-06
Identities = 26/75 (34%), Positives = 39/75 (52%)
Frame = +2
Query: 293 IFIGGLPNYLNEDQVKELLMSFGQLRAFNLVKDSSTGLSKGYAFAEYVDISMTDQAIAGL 472
I + G+ E+QV++L FG ++ +L D TG KGYA EY + +A+
Sbjct: 12 IIVTGVHPEATEEQVEDLFADFGPVKNLHLNLDRRTGYVKGYALIEYATLEQAQKAVDEK 71
Query: 473 NGMQLGDQKLIVQRA 517
N + L D+KL V A
Sbjct: 72 N-LSLLDEKLEVDFA 85
>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 297
Score = 44.4 bits (100), Expect = 1e-05
Identities = 18/75 (24%), Positives = 40/75 (53%)
Frame = +2
Query: 293 IFIGGLPNYLNEDQVKELLMSFGQLRAFNLVKDSSTGLSKGYAFAEYVDISMTDQAIAGL 472
+F+ G+ + + ED+++++ FG + ++++ T S+G+ F + + AI L
Sbjct: 103 LFVSGIASRMQEDELQQIFSKFGTVTHVRIMREPVTKASRGFGFLSFSTVEEATSAIDNL 162
Query: 473 NGMQLGDQKLIVQRA 517
N + + L VQ+A
Sbjct: 163 NSQEFYGRVLNVQKA 177
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 41.5 bits (93), Expect = 8e-05
Identities = 27/134 (20%), Positives = 54/134 (40%), Gaps = 1/134 (0%)
Frame = +2
Query: 80 QINLDKNFAFLEFRSIDETTQAMAFDGIN-FKGQSLKIRRPHDYQPMPGTENPAINVPAG 256
Q K + +++F + + A+A +G G+ + + + P P P AG
Sbjct: 299 QSGRSKGYGYVDFETPEAAKAAVAANGTKEIDGRMVNLDLSN---PRPANPQPYAQQRAG 355
Query: 257 VISTVVPDSPHKIFIGGLPNYLNEDQVKELLMSFGQLRAFNLVKDSSTGLSKGYAFAEYV 436
+ + +F+G L ED + G +++ L D +G KG+ + +
Sbjct: 356 NFGDQLSEPSDTVFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFS 415
Query: 437 DISMTDQAIAGLNG 478
DI + + +NG
Sbjct: 416 DIDSAKKCVE-MNG 428
Score = 31.1 bits (67), Expect = 0.12
Identities = 15/71 (21%), Positives = 35/71 (49%)
Frame = +2
Query: 293 IFIGGLPNYLNEDQVKELLMSFGQLRAFNLVKDSSTGLSKGYAFAEYVDISMTDQAIAGL 472
+F+G L +++ + + +G + ++ D +G SKGY + ++ A+A
Sbjct: 265 VFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPEAAKAAVAA- 323
Query: 473 NGMQLGDQKLI 505
NG + D +++
Sbjct: 324 NGTKEIDGRMV 334
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 41.5 bits (93), Expect = 8e-05
Identities = 21/75 (28%), Positives = 38/75 (50%)
Frame = +2
Query: 293 IFIGGLPNYLNEDQVKELLMSFGQLRAFNLVKDSSTGLSKGYAFAEYVDISMTDQAIAGL 472
++I L + E + +L FG++ + +LVKD + +G+ F Y + +A+ L
Sbjct: 263 VYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQN-DKPRGFGFVNYANHECAQKAVDEL 321
Query: 473 NGMQLGDQKLIVQRA 517
N + +KL V RA
Sbjct: 322 NDKEYKGKKLYVGRA 336
Score = 39.5 bits (88), Expect = 3e-04
Identities = 20/72 (27%), Positives = 37/72 (51%)
Frame = +2
Query: 293 IFIGGLPNYLNEDQVKELLMSFGQLRAFNLVKDSSTGLSKGYAFAEYVDISMTDQAIAGL 472
+FI L ++ + + +FG++ + + D G +KGY F + + + AI +
Sbjct: 170 VFIKNLDPAIDNKALHDTFSAFGKILSCKVAVDE-LGNAKGYGFVHFDSVESANAAIEHV 228
Query: 473 NGMQLGDQKLIV 508
NGM L D+K+ V
Sbjct: 229 NGMLLNDKKVYV 240
Score = 36.3 bits (80), Expect = 0.003
Identities = 22/89 (24%), Positives = 40/89 (44%)
Frame = +2
Query: 209 QPMPGTENPAINVPAGVISTVVPDSPHKIFIGGLPNYLNEDQVKELLMSFGQLRAFNLVK 388
+P T P S P S +++G L + E + EL S G + + + +
Sbjct: 55 EPSESTSTPTNASSVATPSGTAPTSA-SLYVGELDPSVTEAMLFELFNSIGPVASIRVCR 113
Query: 389 DSSTGLSKGYAFAEYVDISMTDQAIAGLN 475
D+ T S GYA+ + ++ ++A+ LN
Sbjct: 114 DAVTRRSLGYAYVNFHNMEDGEKALDELN 142
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 41.1 bits (92), Expect = 1e-04
Identities = 22/80 (27%), Positives = 42/80 (52%), Gaps = 2/80 (2%)
Frame = +2
Query: 275 PDSPHKIFIGGLPNYLN--EDQVKELLMSFGQLRAFNLVKDSSTGLSKGYAFAEYVDISM 448
P P +++ L + + + Q+++L FG + + L ++G+SKGY F + I
Sbjct: 378 PIDPSNLYVKNLDDTVITCKSQLEDLFSPFGSILSSMLACYPNSGISKGYGFVAFRQIEA 437
Query: 449 TDQAIAGLNGMQLGDQKLIV 508
+A LNGM +G +++ V
Sbjct: 438 AVRAKDTLNGMMVGKKRIFV 457
Score = 30.7 bits (66), Expect = 0.16
Identities = 19/90 (21%), Positives = 42/90 (46%), Gaps = 12/90 (13%)
Frame = +2
Query: 278 DSPHKIFIGGLPNYLNEDQVKELLMSFGQLRA-FNLVKDSSTGLSKG-----------YA 421
D I++G + + L+++++ + +GQ+ + F + DS K Y
Sbjct: 14 DESSTIYVGNIDSRLSDEEIIKHFSKYGQVESIFRRLLDSFYPKEKAKPFKPPKNGVQYG 73
Query: 422 FAEYVDISMTDQAIAGLNGMQLGDQKLIVQ 511
F ++V+ ++ + GM LG +KL ++
Sbjct: 74 FVKFVNAESIEEVLKDAKGMTLGQRKLTIK 103
>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 40.7 bits (91), Expect = 1e-04
Identities = 22/80 (27%), Positives = 42/80 (52%), Gaps = 4/80 (5%)
Frame = +2
Query: 290 KIFIGGLPNYLNEDQVKELLMSFGQLRA----FNLVKDSSTGLSKGYAFAEYVDISMTDQ 457
++F+G L + +++ L + G +R F V+ + + G AF + + D+
Sbjct: 45 RVFVGRLSTSTKKSEIRSLFETVGTVRKVTIPFRRVRRGTRLVPSGIAFVTFNNQEDVDK 104
Query: 458 AIAGLNGMQLGDQKLIVQRA 517
AI LNG L D++++VQ+A
Sbjct: 105 AIETLNGKTLDDREIVVQKA 124
Score = 34.3 bits (75), Expect = 0.013
Identities = 23/93 (24%), Positives = 42/93 (45%), Gaps = 12/93 (12%)
Frame = +2
Query: 275 PDSPHKIFIGGLPNYLNEDQVKELLMSFGQLRAFNLVKDSSTGL------------SKGY 418
P P+ I++ GL L + +KE+ ++ RA V+ + +G+
Sbjct: 201 PLPPNSIYVSGLSVTLTNEGLKEMFDAYNPTRARIAVRSLPPYIIRRIKLRGEQRRGRGF 260
Query: 419 AFAEYVDISMTDQAIAGLNGMQLGDQKLIVQRA 517
F + + +AI +NG Q+GD L+V+ A
Sbjct: 261 GFVSFANAEDQSRAIEEMNGKQVGDLTLVVKSA 293
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 40.3 bits (90), Expect = 2e-04
Identities = 16/59 (27%), Positives = 31/59 (52%)
Frame = +2
Query: 290 KIFIGGLPNYLNEDQVKELLMSFGQLRAFNLVKDSSTGLSKGYAFAEYVDISMTDQAIA 466
K+F+GG+P E++ + FG++ L+ D TG +G+ F Y + S + ++
Sbjct: 248 KMFVGGVPGDCTEEEFRNFFNQFGRVLDATLMMDKDTGRPRGFGFVTYENESAVEATMS 306
Score = 39.5 bits (88), Expect = 3e-04
Identities = 16/48 (33%), Positives = 30/48 (62%)
Frame = +2
Query: 290 KIFIGGLPNYLNEDQVKELLMSFGQLRAFNLVKDSSTGLSKGYAFAEY 433
K+FIGGL +D +++ FG++ +++DS+TG S+G+ F +
Sbjct: 164 KMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTF 211
>SPBC18H10.03 |tif35||translation initiation factor
eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
Length = 282
Score = 40.3 bits (90), Expect = 2e-04
Identities = 20/67 (29%), Positives = 34/67 (50%)
Frame = +2
Query: 278 DSPHKIFIGGLPNYLNEDQVKELLMSFGQLRAFNLVKDSSTGLSKGYAFAEYVDISMTDQ 457
D + + L + E+++++L FG ++ L KD TG +KG+AF Y D +
Sbjct: 199 DDSATLRVTNLSDDTREEELRDLFRRFGGIQRVYLAKDKETGRAKGFAFVSYYDRDCAIK 258
Query: 458 AIAGLNG 478
A L+G
Sbjct: 259 ARDRLDG 265
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 39.1 bits (87), Expect = 5e-04
Identities = 22/75 (29%), Positives = 33/75 (44%)
Frame = +2
Query: 293 IFIGGLPNYLNEDQVKELLMSFGQLRAFNLVKDSSTGLSKGYAFAEYVDISMTDQAIAGL 472
+F+G L ++E + + + GQL V G SKGY F Y D AI +
Sbjct: 101 LFVGNLDPLVDERVLYDTFSALGQLVKAPQVARDENGRSKGYGFVSYDSFETADAAIEAM 160
Query: 473 NGMQLGDQKLIVQRA 517
N L ++ + V A
Sbjct: 161 NNQFLMNKPITVSYA 175
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 38.7 bits (86), Expect = 6e-04
Identities = 23/73 (31%), Positives = 37/73 (50%)
Frame = +2
Query: 293 IFIGGLPNYLNEDQVKELLMSFGQLRAFNLVKDSSTGLSKGYAFAEYVDISMTDQAIAGL 472
+F+ L N L ++ + G +R +V+D +G SKG A+ E+ AIA L
Sbjct: 242 VFVSQLANRLTSRELYDFFEQAGPVRDAQIVRDKISGRSKGVAYVEFCHEDSVQAAIA-L 300
Query: 473 NGMQLGDQKLIVQ 511
+G +L +IVQ
Sbjct: 301 SGKRLLGLPVIVQ 313
Score = 37.9 bits (84), Expect = 0.001
Identities = 30/138 (21%), Positives = 57/138 (41%)
Frame = +2
Query: 95 KNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDYQPMPGTENPAINVPAGVISTVV 274
K A++EF D A+A G G + ++ + E + A S +
Sbjct: 281 KGVAYVEFCHEDSVQAAIALSGKRLLGLPVIVQLTEAEKNRKAREAAEL---ARAASAEI 337
Query: 275 PDSPHKIFIGGLPNYLNEDQVKELLMSFGQLRAFNLVKDSSTGLSKGYAFAEYVDISMTD 454
P H++ + + L ++ VK + FG + +L +D SKG+ + +Y +
Sbjct: 338 PF--HRLCVSNIHFNLTDEDVKAIFEPFGDIEFVHLQRDDQ-NRSKGFGYIQYRNPISAR 394
Query: 455 QAIAGLNGMQLGDQKLIV 508
A+ +NG L + + V
Sbjct: 395 NALEKMNGFDLAGRNMRV 412
>SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 36.7 bits (81), Expect = 0.002
Identities = 19/81 (23%), Positives = 40/81 (49%)
Frame = +2
Query: 290 KIFIGGLPNYLNEDQVKELLMSFGQLRAFNLVKDSSTGLSKGYAFAEYVDISMTDQAIAG 469
++F+G L N +N++ + + + L +V+D G ++G+ F + D +A
Sbjct: 31 RLFVGNLGNDVNDESLYQAFSEYPSLVKTKVVRDRE-GKTRGFGFVSFKDSDQFLKAWRE 89
Query: 470 LNGMQLGDQKLIVQRASIGAK 532
NG +G + + + RA+ K
Sbjct: 90 KNGKYIGSRPVKLSRATSDVK 110
>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 529
Score = 36.3 bits (80), Expect = 0.003
Identities = 31/136 (22%), Positives = 63/136 (46%)
Frame = +2
Query: 65 PVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDYQPMPGTENPAIN 244
P+ + I +KN AF+ F + + A AF F+ +LK + G + +
Sbjct: 139 PIESAWILPEKNCAFISFL---DPSHATAF----FQDAALKRLTIRGTEVKVGWGKNSAS 191
Query: 245 VPAGVISTVVPDSPHKIFIGGLPNYLNEDQVKELLMSFGQLRAFNLVKDSSTGLSKGYAF 424
+ +++ + +F+G LPN + ED+++E L FG + +V + + AF
Sbjct: 192 NSSVLLAVQQSGACRNVFLGNLPNGITEDEIREDLEPFGPIDQIKIVTE------RNIAF 245
Query: 425 AEYVDISMTDQAIAGL 472
+++I+ +A+ L
Sbjct: 246 VHFLNIAAAIKAVQEL 261
Score = 27.1 bits (57), Expect = 2.0
Identities = 16/73 (21%), Positives = 32/73 (43%)
Frame = +2
Query: 245 VPAGVISTVVPDSPHKIFIGGLPNYLNEDQVKELLMSFGQLRAFNLVKDSSTGLSKGYAF 424
+P+ + V + I+IG + L +++KE FG++ N ++ K AF
Sbjct: 400 LPSNIALAVAGGASRNIYIGNADDSLTIERLKEDFEEFGEIEYVNFFRE------KNCAF 453
Query: 425 AEYVDISMTDQAI 463
+ ++ AI
Sbjct: 454 VNFTSLASAINAI 466
>SPCC1827.05c |||nucleolar RNA-binding protein NIFK
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 276
Score = 36.3 bits (80), Expect = 0.003
Identities = 15/54 (27%), Positives = 29/54 (53%)
Frame = +2
Query: 293 IFIGGLPNYLNEDQVKELLMSFGQLRAFNLVKDSSTGLSKGYAFAEYVDISMTD 454
+++G LP+ E Q++ FG + + ++ TG SK YAF E+ + + +
Sbjct: 107 LYVGRLPHGFYEKQMRMYFSQFGPVLRLRMSRNRKTGSSKHYAFIEFESLDVAN 160
>SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 35.9 bits (79), Expect = 0.004
Identities = 18/72 (25%), Positives = 38/72 (52%)
Frame = +2
Query: 293 IFIGGLPNYLNEDQVKELLMSFGQLRAFNLVKDSSTGLSKGYAFAEYVDISMTDQAIAGL 472
+++G + + ++++ S G + ++ D TG KG+A+ E+ + S+ A+ L
Sbjct: 57 VYVGNVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKGFAYIEFSEPSLVPNALL-L 115
Query: 473 NGMQLGDQKLIV 508
NG L ++ L V
Sbjct: 116 NGSMLHERPLKV 127
>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 438
Score = 35.9 bits (79), Expect = 0.004
Identities = 25/95 (26%), Positives = 46/95 (48%), Gaps = 2/95 (2%)
Frame = +2
Query: 278 DSPHKIFIGGLPNYLNEDQVKELLMSFGQLRAFNLVKDSSTGLSKGYAFAEYVDISMTDQ 457
D+ +F+G L E+ + G + +V+D T L KG+A+ ++ D D+
Sbjct: 267 DTKRCVFVGNLAFEAEEEPLWRYFGDCGSIDYVRIVRDPKTNLGKGFAYIQFKDTMGVDK 326
Query: 458 AIAGLNGMQLGD-QKLIVQRA-SIGAKNSTLAMTG 556
A+ LN ++ + + L + RA S K+ T + G
Sbjct: 327 ALL-LNEKKMPEGRTLRIMRAKSTKPKSITRSKRG 360
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 34.7 bits (76), Expect = 0.010
Identities = 18/66 (27%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
Frame = +2
Query: 314 NYLNEDQVKELLMS-FGQLRAFNLVKDSSTGLSKGYAFAEYVDISMTDQAIAGLNGMQLG 490
N + +D+ EL+ S FG++ + +++D TG S YAF E+ + ++A + + +
Sbjct: 252 NPVTQDEDLELIFSRFGKIISCQVIRDKETGDSLQYAFIEFDNKESVEKAYFKMQNVLID 311
Query: 491 DQKLIV 508
D ++ V
Sbjct: 312 DSRIHV 317
>SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 233
Score = 34.7 bits (76), Expect = 0.010
Identities = 14/49 (28%), Positives = 28/49 (57%)
Frame = +2
Query: 293 IFIGGLPNYLNEDQVKELLMSFGQLRAFNLVKDSSTGLSKGYAFAEYVD 439
+F+G LP + + ++ GQ+ + + D ++G KGYAF E+++
Sbjct: 94 LFVGNLPKDSSVETLQLHFKRAGQVPSVRIPTDKTSGRQKGYAFVEFIN 142
>SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 243
Score = 32.7 bits (71), Expect = 0.039
Identities = 18/79 (22%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
Frame = +2
Query: 275 PDSPHK-IFIGGLPNYLNEDQVKELLMSFGQLRAFNLVKDSSTGLSKGYAFAEYVDISMT 451
P+ P + I + L + ++ + E+ +G + + + L+KGY + EYV
Sbjct: 94 PEEPLRTILVENLTRNVTKEHIAEIFGIYGLIDHIFMPIYKKSELNKGYCYIEYVYHDQA 153
Query: 452 DQAIAGLNGMQLGDQKLIV 508
A+ +N +L ++L V
Sbjct: 154 ANAVDKMNNAELDGEELFV 172
>SPBC13A2.01c |||nuclear cap-binding complex small
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 182
Score = 32.7 bits (71), Expect = 0.039
Identities = 14/49 (28%), Positives = 24/49 (48%)
Frame = +2
Query: 293 IFIGGLPNYLNEDQVKELLMSFGQLRAFNLVKDSSTGLSKGYAFAEYVD 439
+++G L Y E+Q+ L G++R + D T G+ F EY +
Sbjct: 34 VYVGNLSFYTTEEQIYALFSKCGEIRRIIMGVDRFTKTPCGFCFVEYFE 82
>SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding
protein 1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 567
Score = 31.5 bits (68), Expect = 0.091
Identities = 14/45 (31%), Positives = 24/45 (53%)
Frame = +2
Query: 293 IFIGGLPNYLNEDQVKELLMSFGQLRAFNLVKDSSTGLSKGYAFA 427
++I GLP +++ + FG++ + + D T L KGY FA
Sbjct: 298 VYIRGLPPNTSDENLLLYTNRFGKVSSSKAIIDMETNLCKGYGFA 342
>SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 632
Score = 31.1 bits (67), Expect = 0.12
Identities = 19/66 (28%), Positives = 32/66 (48%)
Frame = +2
Query: 293 IFIGGLPNYLNEDQVKELLMSFGQLRAFNLVKDSSTGLSKGYAFAEYVDISMTDQAIAGL 472
+F+GGL + L+E ++ FG R N+ KG F +Y + S ++AI +
Sbjct: 299 VFVGGLASNLSEKDLQVCFQPFG--RILNI----KIPFGKGCGFVQYSEKSAAEKAINTM 352
Query: 473 NGMQLG 490
G +G
Sbjct: 353 QGALVG 358
Score = 27.9 bits (59), Expect = 1.1
Identities = 21/91 (23%), Positives = 35/91 (38%), Gaps = 1/91 (1%)
Frame = +2
Query: 278 DSPHKIFIGGL-PNYLNEDQVKELLMSFGQLRAFNLVKDSSTGLSKGYAFAEYVDISMTD 454
D IF+G L P + D + + ++ D TGLS+ Y F +
Sbjct: 179 DPEFSIFVGDLLPTTEDSDLFMTFRSIYPSCTSAKIIVDPVTGLSRKYGFVRFSSEKEQQ 238
Query: 455 QAIAGLNGMQLGDQKLIVQRASIGAKNSTLA 547
A+ + G + L + AS ++ S A
Sbjct: 239 HALMHMQGYLCQGRPLRISVASPKSRASIAA 269
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 30.3 bits (65), Expect = 0.21
Identities = 17/70 (24%), Positives = 34/70 (48%)
Frame = +2
Query: 293 IFIGGLPNYLNEDQVKELLMSFGQLRAFNLVKDSSTGLSKGYAFAEYVDISMTDQAIAGL 472
I++G LP ++ + +L G + + + TG SKG+ ++ + + +I L
Sbjct: 282 IYVGNLPWATSDRNLLDLFTDIGSVIRARIAYEP-TGRSKGFGVVQFENENDAASSIEKL 340
Query: 473 NGMQLGDQKL 502
NG + G + L
Sbjct: 341 NGYRYGGRPL 350
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 29.9 bits (64), Expect = 0.28
Identities = 23/88 (26%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
Frame = +2
Query: 257 VISTVVPDSPHKIFIGGLPNYLNEDQVKELLMS-FGQLRAFNLVKDSSTGLSKGYAFAEY 433
V T+ D+ ++ I LP + + Q E S FG++R + G G+AF
Sbjct: 97 VKKTIRQDNRPRLIIRNLPWSIKKPQHLEPHFSKFGKVREIK-IPTKGGGRMCGFAFVWM 155
Query: 434 VDISMTDQAIAGLNGMQLGDQKLIVQRA 517
D ++A+ LNG ++ + + V A
Sbjct: 156 KDRKAAEEAMNSLNGTEIDGRPIAVDWA 183
Score = 27.1 bits (57), Expect = 2.0
Identities = 11/38 (28%), Positives = 21/38 (55%)
Frame = +2
Query: 392 SSTGLSKGYAFAEYVDISMTDQAIAGLNGMQLGDQKLI 505
+ G SKG+ F +++ A+ LNG ++ +K+I
Sbjct: 533 AGAGRSKGFGFMQFISHKYALMALRWLNGREITVKKII 570
Score = 25.4 bits (53), Expect = 6.0
Identities = 14/47 (29%), Positives = 21/47 (44%)
Frame = +2
Query: 293 IFIGGLPNYLNEDQVKELLMSFGQLRAFNLVKDSSTGLSKGYAFAEY 433
+F+ L E ++ FG L LVKD +T S G F ++
Sbjct: 279 VFVRNLLFECTEQELYNHFRQFGPLAYAKLVKDPATDRSLGRGFIKF 325
>SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 490
Score = 29.9 bits (64), Expect = 0.28
Identities = 17/76 (22%), Positives = 32/76 (42%)
Frame = +2
Query: 284 PHKIFIGGLPNYLNEDQVKELLMSFGQLRAFNLVKDSSTGLSKGYAFAEYVDISMTDQAI 463
P I + +P L +D + + G R + G+ +G AFA + +
Sbjct: 201 PTAIVVKNIPFSLEKDTLLDHFKQLGIPRPYAFNYHYDNGIFRGLAFANFYRPEEAQVVV 260
Query: 464 AGLNGMQLGDQKLIVQ 511
LNG ++ ++L V+
Sbjct: 261 QTLNGYEINGRRLRVE 276
>SPCC306.04c |set1||histone lysine methyltransferase
Set1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 920
Score = 28.3 bits (60), Expect = 0.84
Identities = 12/47 (25%), Positives = 25/47 (53%)
Frame = +2
Query: 275 PDSPHKIFIGGLPNYLNEDQVKELLMSFGQLRAFNLVKDSSTGLSKG 415
P+ P ++F+ + + +Q++ SFG++ +L + TG S G
Sbjct: 90 PEPPTQVFVSNISPLVTSEQLRYHFKSFGEVFDLDLKLNPYTGTSLG 136
>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 654
Score = 27.5 bits (58), Expect = 1.5
Identities = 13/50 (26%), Positives = 26/50 (52%)
Frame = +2
Query: 293 IFIGGLPNYLNEDQVKELLMSFGQLRAFNLVKDSSTGLSKGYAFAEYVDI 442
+FIG LP+ +E +++E FG++ ++ K AF +++I
Sbjct: 301 VFIGNLPSSYHEKEIEEAFGKFGKIEHIKILS------KKNIAFVHFLNI 344
>SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1396
Score = 27.1 bits (57), Expect = 2.0
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -2
Query: 110 GMQSFCLN*FDKRELGCRRLAPNRTDASVD 21
G +S LN FD RE+ C +AP A ++
Sbjct: 613 GYESIMLNEFDGREIPCSLMAPAPDTAPIE 642
>SPAC343.11c |msc1||multi-copy suppressor of Chk1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1588
Score = 26.6 bits (56), Expect = 2.6
Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Frame = -1
Query: 528 APILAL*TINFWSPN-CIPLSPAIAWSVIDISTYSA 424
AP I++W+ N CIP S I W +D S+
Sbjct: 326 APFAPFSDIHYWTCNSCIPSSLKILWKEVDYHCISS 361
>SPAC637.03 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 269
Score = 26.2 bits (55), Expect = 3.4
Identities = 11/45 (24%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Frame = -3
Query: 337 NLIFIQIVWQ-TTNKYFVRRIWYYCTYDTSWNIYGRIFSARHGLI 206
N+ + VW T K + + C + +S+ +YG+ R+G +
Sbjct: 92 NVFVVFTVWAFTREKLYWTAFFSLCLFSSSFTMYGQSLRLRNGFV 136
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 25.4 bits (53), Expect = 6.0
Identities = 9/14 (64%), Positives = 9/14 (64%)
Frame = +1
Query: 238 HKCSSWCHKYSSTR 279
HKCS CH S TR
Sbjct: 423 HKCSKTCHPISETR 436
>SPBC21B10.06c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 470
Score = 25.4 bits (53), Expect = 6.0
Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Frame = +2
Query: 356 FGQLRAFNLVKDSSTGLSKGYAF-AEYVDISMTDQAIAGLNGMQLGDQKLIV 508
FG+L +F+L K SST L + + A + DQ+ LN ++ +L +
Sbjct: 272 FGKLNSFDLRKGSSTSLKRSSMYLARKENQDFDDQSTQILNHIKTAYYELTI 323
>SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1190
Score = 25.4 bits (53), Expect = 6.0
Identities = 18/52 (34%), Positives = 30/52 (57%)
Frame = +2
Query: 197 PHDYQPMPGTENPAINVPAGVISTVVPDSPHKIFIGGLPNYLNEDQVKELLM 352
P D+ + + A + P GV S++ +S +GGL NY+N Q+KE++M
Sbjct: 239 PPDFGRIREKSDLADSDPLGVDSSLSFES-----VGGLDNYIN--QLKEMVM 283
>SPCC584.13 |||amino acid permease, unknown 14|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 544
Score = 25.0 bits (52), Expect = 7.9
Identities = 17/62 (27%), Positives = 25/62 (40%)
Frame = +2
Query: 5 EVEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSL 184
E EF HL ++ G A + + F +FR D T AM + + F G L
Sbjct: 435 EDEFKRGPWHLGKFSKINGYAACAFVLLMVPILCFPQFRGKDNTPDAMNWTCVVFGGPML 494
Query: 185 KI 190
+
Sbjct: 495 MV 496
>SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 576
Score = 25.0 bits (52), Expect = 7.9
Identities = 16/76 (21%), Positives = 33/76 (43%)
Frame = +2
Query: 284 PHKIFIGGLPNYLNEDQVKELLMSFGQLRAFNLVKDSSTGLSKGYAFAEYVDISMTDQAI 463
P I I +P L ++ + ++ + R + G+ +G AFA + +
Sbjct: 231 PTAIVIKNIPFSLKKEVLFKVFTALDIPRPYAFNYHFDNGVFRGLAFANFHSPEEAKTVV 290
Query: 464 AGLNGMQLGDQKLIVQ 511
LNG ++ ++L V+
Sbjct: 291 QVLNGYEITGRRLRVE 306
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,375,833
Number of Sequences: 5004
Number of extensions: 48414
Number of successful extensions: 184
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 182
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 244081442
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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